Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS18700 and QEN71_RS18705 are separated by 28 nucleotides QEN71_RS18705 and QEN71_RS18710 are separated by 83 nucleotides QEN71_RS18710 and QEN71_RS18715 are separated by 14 nucleotides
QEN71_RS18700: QEN71_RS18700 - electron transfer flavoprotein subunit beta/FixA family protein, at 4,163,568 to 4,164,317
_RS18700
QEN71_RS18705: QEN71_RS18705 - electron transfer flavoprotein subunit alpha/FixB family protein, at 4,164,346 to 4,165,281
_RS18705
QEN71_RS18710: QEN71_RS18710 - MaoC family dehydratase, at 4,165,365 to 4,165,835
_RS18710
QEN71_RS18715: QEN71_RS18715 - class I poly(R)-hydroxyalkanoic acid synthase, at 4,165,850 to 4,167,590
_RS18715
Position (kb) 4164
4165
4166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4163.371 kb on + strand at 4163.371 kb on + strand at 4163.372 kb on - strand at 4163.372 kb on - strand at 4163.372 kb on - strand at 4163.400 kb on - strand at 4163.481 kb on + strand at 4163.482 kb on - strand at 4163.556 kb on + strand at 4163.587 kb on + strand at 4163.596 kb on + strand at 4163.596 kb on + strand at 4163.597 kb on - strand at 4163.605 kb on - strand at 4164.360 kb on - strand at 4164.727 kb on + strand, within QEN71_RS18705 at 4164.727 kb on + strand, within QEN71_RS18705 at 4165.611 kb on + strand, within QEN71_RS18710 at 4165.750 kb on + strand, within QEN71_RS18710 at 4166.189 kb on + strand, within QEN71_RS18715 at 4166.189 kb on + strand, within QEN71_RS18715 at 4166.189 kb on + strand, within QEN71_RS18715 at 4166.190 kb on - strand, within QEN71_RS18715
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 4,163,371 + -1.2 4,163,371 + -0.3 4,163,372 - -0.7 4,163,372 - +0.1 4,163,372 - -0.3 4,163,400 - -1.4 4,163,481 + -0.4 4,163,482 - -0.1 4,163,556 + -0.0 4,163,587 + +0.6 4,163,596 + -0.3 4,163,596 + -1.3 4,163,597 - -1.7 4,163,605 - +0.4 4,164,360 - +3.0 4,164,727 + QEN71_RS18705 0.41 +3.3 4,164,727 + QEN71_RS18705 0.41 +2.8 4,165,611 + QEN71_RS18710 0.52 -2.7 4,165,750 + QEN71_RS18710 0.82 -0.4 4,166,189 + QEN71_RS18715 0.19 -0.0 4,166,189 + QEN71_RS18715 0.19 +0.4 4,166,189 + QEN71_RS18715 0.19 -0.5 4,166,190 - QEN71_RS18715 0.20 -0.2
Or see this region's nucleotide sequence