Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS16820 and QEN71_RS16825 are separated by 90 nucleotides QEN71_RS16825 and QEN71_RS16830 are separated by 13 nucleotides
QEN71_RS16820: QEN71_RS16820 - Gfo/Idh/MocA family oxidoreductase, at 3,726,106 to 3,727,035
_RS16820
QEN71_RS16825: QEN71_RS16825 - arabinose ABC transporter substrate-binding protein, at 3,727,126 to 3,728,130
_RS16825
QEN71_RS16830: QEN71_RS16830 - L-arabinose ABC transporter ATP-binding protein AraG, at 3,728,144 to 3,729,706
_RS16830
Position (kb) 3727
3728
3729 Strain fitness (log2 ratio) -1
0
1 at 3726.247 kb on + strand, within QEN71_RS16820 at 3726.247 kb on + strand, within QEN71_RS16820 at 3726.248 kb on - strand, within QEN71_RS16820 at 3726.248 kb on - strand, within QEN71_RS16820 at 3726.727 kb on + strand, within QEN71_RS16820 at 3726.911 kb on + strand, within QEN71_RS16820 at 3726.911 kb on + strand, within QEN71_RS16820 at 3726.912 kb on - strand, within QEN71_RS16820 at 3726.912 kb on - strand, within QEN71_RS16820 at 3726.912 kb on - strand, within QEN71_RS16820 at 3726.912 kb on - strand, within QEN71_RS16820 at 3726.912 kb on - strand, within QEN71_RS16820 at 3726.913 kb on + strand, within QEN71_RS16820 at 3726.913 kb on + strand, within QEN71_RS16820 at 3726.913 kb on + strand, within QEN71_RS16820 at 3726.913 kb on + strand, within QEN71_RS16820 at 3726.914 kb on - strand, within QEN71_RS16820 at 3726.914 kb on - strand, within QEN71_RS16820 at 3727.033 kb on + strand at 3727.033 kb on + strand at 3727.033 kb on + strand at 3727.034 kb on - strand at 3727.078 kb on - strand at 3727.459 kb on + strand, within QEN71_RS16825 at 3727.459 kb on + strand, within QEN71_RS16825 at 3727.459 kb on + strand, within QEN71_RS16825 at 3727.460 kb on - strand, within QEN71_RS16825 at 3727.966 kb on + strand, within QEN71_RS16825 at 3727.967 kb on - strand, within QEN71_RS16825 at 3728.136 kb on + strand at 3728.137 kb on - strand at 3728.472 kb on - strand, within QEN71_RS16830 at 3728.472 kb on - strand, within QEN71_RS16830 at 3728.472 kb on - strand, within QEN71_RS16830 at 3728.802 kb on - strand, within QEN71_RS16830 at 3728.828 kb on + strand, within QEN71_RS16830 at 3728.828 kb on + strand, within QEN71_RS16830 at 3728.829 kb on - strand, within QEN71_RS16830 at 3728.829 kb on - strand, within QEN71_RS16830 at 3728.954 kb on + strand, within QEN71_RS16830 at 3728.955 kb on - strand, within QEN71_RS16830 at 3728.955 kb on - strand, within QEN71_RS16830 at 3728.955 kb on - strand, within QEN71_RS16830 at 3728.985 kb on + strand, within QEN71_RS16830 at 3728.986 kb on - strand, within QEN71_RS16830 at 3729.116 kb on + strand, within QEN71_RS16830
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 3,726,247 + QEN71_RS16820 0.15 -0.0 3,726,247 + QEN71_RS16820 0.15 -0.5 3,726,248 - QEN71_RS16820 0.15 +1.1 3,726,248 - QEN71_RS16820 0.15 -1.4 3,726,727 + QEN71_RS16820 0.67 -1.6 3,726,911 + QEN71_RS16820 0.87 +1.3 3,726,911 + QEN71_RS16820 0.87 +0.2 3,726,912 - QEN71_RS16820 0.87 -1.4 3,726,912 - QEN71_RS16820 0.87 -0.3 3,726,912 - QEN71_RS16820 0.87 +0.0 3,726,912 - QEN71_RS16820 0.87 +0.0 3,726,912 - QEN71_RS16820 0.87 -0.9 3,726,913 + QEN71_RS16820 0.87 -0.1 3,726,913 + QEN71_RS16820 0.87 +0.3 3,726,913 + QEN71_RS16820 0.87 +0.8 3,726,913 + QEN71_RS16820 0.87 -1.6 3,726,914 - QEN71_RS16820 0.87 +0.2 3,726,914 - QEN71_RS16820 0.87 -0.1 3,727,033 + +0.0 3,727,033 + -0.2 3,727,033 + -0.5 3,727,034 - +1.3 3,727,078 - -1.1 3,727,459 + QEN71_RS16825 0.33 -0.2 3,727,459 + QEN71_RS16825 0.33 -0.1 3,727,459 + QEN71_RS16825 0.33 +0.2 3,727,460 - QEN71_RS16825 0.33 -0.9 3,727,966 + QEN71_RS16825 0.84 +0.3 3,727,967 - QEN71_RS16825 0.84 +0.3 3,728,136 + -0.2 3,728,137 - -0.2 3,728,472 - QEN71_RS16830 0.21 -0.8 3,728,472 - QEN71_RS16830 0.21 +0.0 3,728,472 - QEN71_RS16830 0.21 -0.2 3,728,802 - QEN71_RS16830 0.42 +0.0 3,728,828 + QEN71_RS16830 0.44 -1.1 3,728,828 + QEN71_RS16830 0.44 +0.9 3,728,829 - QEN71_RS16830 0.44 +0.3 3,728,829 - QEN71_RS16830 0.44 +1.6 3,728,954 + QEN71_RS16830 0.52 +0.1 3,728,955 - QEN71_RS16830 0.52 +0.3 3,728,955 - QEN71_RS16830 0.52 +1.1 3,728,955 - QEN71_RS16830 0.52 -0.7 3,728,985 + QEN71_RS16830 0.54 -0.1 3,728,986 - QEN71_RS16830 0.54 +0.3 3,729,116 + QEN71_RS16830 0.62 -0.8
Or see this region's nucleotide sequence