Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS08495 and QEN71_RS08500 overlap by 31 nucleotides QEN71_RS08500 and QEN71_RS08505 are separated by 869 nucleotides
QEN71_RS08495: QEN71_RS08495 - acyltransferase family protein, at 1,896,758 to 1,897,738
_RS08495
QEN71_RS08500: QEN71_RS08500 - IS5 family transposase, at 1,897,708 to 1,898,519
_RS08500
QEN71_RS08505: QEN71_RS08505 - undecaprenyl-phosphate glucose phosphotransferase, at 1,899,389 to 1,900,759
_RS08505
Position (kb) 1897
1898
1899 Strain fitness (log2 ratio) -1
0
1
2 at 1896.787 kb on + strand at 1896.788 kb on - strand at 1896.821 kb on + strand at 1896.984 kb on + strand, within QEN71_RS08495 at 1896.985 kb on - strand, within QEN71_RS08495 at 1896.985 kb on - strand, within QEN71_RS08495 at 1896.985 kb on - strand, within QEN71_RS08495 at 1896.985 kb on - strand, within QEN71_RS08495 at 1897.067 kb on - strand, within QEN71_RS08495 at 1897.144 kb on + strand, within QEN71_RS08495 at 1897.198 kb on + strand, within QEN71_RS08495 at 1897.267 kb on - strand, within QEN71_RS08495 at 1897.310 kb on - strand, within QEN71_RS08495 at 1897.336 kb on + strand, within QEN71_RS08495 at 1897.337 kb on - strand, within QEN71_RS08495 at 1897.450 kb on - strand, within QEN71_RS08495 at 1897.469 kb on + strand, within QEN71_RS08495 at 1897.560 kb on + strand, within QEN71_RS08495 at 1897.561 kb on - strand, within QEN71_RS08495 at 1897.622 kb on + strand, within QEN71_RS08495 at 1897.623 kb on - strand, within QEN71_RS08495 at 1897.645 kb on + strand at 1897.645 kb on + strand at 1897.652 kb on - strand at 1897.700 kb on + strand at 1897.928 kb on - strand, within QEN71_RS08500 at 1897.928 kb on - strand, within QEN71_RS08500 at 1897.940 kb on + strand, within QEN71_RS08500 at 1897.941 kb on - strand, within QEN71_RS08500 at 1898.355 kb on + strand, within QEN71_RS08500 at 1898.355 kb on + strand, within QEN71_RS08500 at 1898.356 kb on - strand, within QEN71_RS08500 at 1898.399 kb on + strand, within QEN71_RS08500 at 1898.400 kb on - strand, within QEN71_RS08500 at 1898.400 kb on - strand, within QEN71_RS08500 at 1898.672 kb on - strand at 1899.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,896,787 + +0.1 1,896,788 - -0.5 1,896,821 + +1.8 1,896,984 + QEN71_RS08495 0.23 -0.7 1,896,985 - QEN71_RS08495 0.23 +0.1 1,896,985 - QEN71_RS08495 0.23 -0.4 1,896,985 - QEN71_RS08495 0.23 +0.6 1,896,985 - QEN71_RS08495 0.23 +0.2 1,897,067 - QEN71_RS08495 0.31 +1.4 1,897,144 + QEN71_RS08495 0.39 -0.3 1,897,198 + QEN71_RS08495 0.45 +1.5 1,897,267 - QEN71_RS08495 0.52 -0.8 1,897,310 - QEN71_RS08495 0.56 -0.6 1,897,336 + QEN71_RS08495 0.59 -0.4 1,897,337 - QEN71_RS08495 0.59 +1.2 1,897,450 - QEN71_RS08495 0.71 +0.1 1,897,469 + QEN71_RS08495 0.72 -0.5 1,897,560 + QEN71_RS08495 0.82 +0.1 1,897,561 - QEN71_RS08495 0.82 +0.0 1,897,622 + QEN71_RS08495 0.88 -0.4 1,897,623 - QEN71_RS08495 0.88 -0.9 1,897,645 + -0.2 1,897,645 + +0.8 1,897,652 - +0.2 1,897,700 + -0.8 1,897,928 - QEN71_RS08500 0.27 +1.0 1,897,928 - QEN71_RS08500 0.27 +1.8 1,897,940 + QEN71_RS08500 0.29 +0.3 1,897,941 - QEN71_RS08500 0.29 +1.3 1,898,355 + QEN71_RS08500 0.80 +1.3 1,898,355 + QEN71_RS08500 0.80 -0.9 1,898,356 - QEN71_RS08500 0.80 +1.1 1,898,399 + QEN71_RS08500 0.85 -1.0 1,898,400 - QEN71_RS08500 0.85 -0.8 1,898,400 - QEN71_RS08500 0.85 -0.5 1,898,672 - -0.6 1,899,057 + -1.0
Or see this region's nucleotide sequence