Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07285

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
1,620,453	+		QEN71_RS07275	0.32	+0.4
1,620,453	+		QEN71_RS07275	0.32	+0.0
1,620,453	+		QEN71_RS07275	0.32	+0.5
1,620,454	-		QEN71_RS07275	0.32	+1.6
1,620,454	-		QEN71_RS07275	0.32	-2.2
1,620,669	+		QEN71_RS07275	0.59	+0.7
1,620,669	+		QEN71_RS07275	0.59	+0.5
1,620,669	+		QEN71_RS07275	0.59	+0.6
1,620,669	+		QEN71_RS07275	0.59	-0.7
1,620,669	+		QEN71_RS07275	0.59	+0.7
1,620,669	+		QEN71_RS07275	0.59	+1.4
1,620,669	+		QEN71_RS07275	0.59	-0.5
1,620,669	+		QEN71_RS07275	0.59	-1.5
1,620,669	+		QEN71_RS07275	0.59	-1.1
1,620,670	-		QEN71_RS07275	0.59	-1.5
1,620,670	-		QEN71_RS07275	0.59	-0.8
1,620,670	-		QEN71_RS07275	0.59	+0.5
1,620,670	-		QEN71_RS07275	0.59	-2.8
1,620,670	-		QEN71_RS07275	0.59	-0.5
1,620,670	-		QEN71_RS07275	0.59	+1.5
1,620,838	+		QEN71_RS07275	0.80	+0.5
1,620,838	+		QEN71_RS07275	0.80	+0.7
1,620,839	-		QEN71_RS07275	0.80	+0.5
1,620,839	-		QEN71_RS07275	0.80	-0.2
1,620,933	+				-2.1
1,620,933	+				+0.5
1,620,933	+				+1.2
1,620,933	+				-0.6
1,620,933	+				-1.6
1,620,933	+				+1.8
1,620,933	+				-0.1
1,620,934	-				-2.2
1,620,934	-				-1.0
1,620,934	-				+0.8
1,620,934	-				+0.2
1,620,934	-				+0.3
1,620,934	-				-3.1
1,621,009	+				-0.1
1,621,009	+				-1.1
1,621,009	+				-0.3
1,621,009	+				+0.8
1,621,009	+				-0.3
1,621,009	+				+1.1
1,621,010	-				-0.9
1,621,010	-				+0.5
1,621,010	-				-1.0
1,621,010	-				-1.8
1,621,010	-				+2.1
1,621,010	-				+0.3
1,621,010	-				-2.3
1,621,010	-				+0.9
1,621,010	-				-0.7
1,621,059	+				+1.2
1,621,059	+				-2.7
1,621,059	+				+1.0
1,621,059	+				-2.3
1,621,060	-				+2.4
1,621,060	-				+0.2
1,621,060	-				+2.1
1,621,060	-				-1.5
1,621,060	-				+0.5
1,621,065	+				-0.1
1,621,065	+				-2.1
1,621,065	+				-1.4
1,621,065	+				-1.9
1,621,309	+		QEN71_RS07280	0.71	+1.1
1,621,309	+		QEN71_RS07280	0.71	-2.1
1,621,310	-		QEN71_RS07280	0.71	+0.2
1,621,317	+		QEN71_RS07280	0.73	+2.2
1,621,317	+		QEN71_RS07280	0.73	+1.2
1,621,317	+		QEN71_RS07280	0.73	+0.0
1,621,318	-		QEN71_RS07280	0.73	-0.4
1,621,318	-		QEN71_RS07280	0.73	-1.6
1,621,456	+				-0.1
1,621,457	-				-2.8
1,621,457	-				+0.9
1,621,493	-		QEN71_RS07285	0.12	-0.4
1,621,507	+		QEN71_RS07285	0.15	-0.2
1,621,508	-		QEN71_RS07285	0.16	-2.6
1,621,669	+		QEN71_RS07285	0.52	-1.2
1,621,669	+		QEN71_RS07285	0.52	-1.0
1,621,670	-		QEN71_RS07285	0.53	+1.3
1,621,670	-		QEN71_RS07285	0.53	-0.1
1,621,670	-		QEN71_RS07285	0.53	+0.9
1,621,670	-		QEN71_RS07285	0.53	-0.6
1,621,747	+		QEN71_RS07285	0.70	-0.6
1,621,747	+		QEN71_RS07285	0.70	+0.2
1,621,747	+		QEN71_RS07285	0.70	-1.5
1,621,747	+		QEN71_RS07285	0.70	-0.0
1,621,748	-		QEN71_RS07285	0.70	-0.3
1,621,748	-		QEN71_RS07285	0.70	-1.2
1,621,748	-		QEN71_RS07285	0.70	+0.1
1,621,748	-		QEN71_RS07285	0.70	-0.0
1,621,748	-		QEN71_RS07285	0.70	-0.1
1,621,748	-		QEN71_RS07285	0.70	-0.4
1,621,748	-		QEN71_RS07285	0.70	-0.1
1,621,878	-				-0.0
1,622,004	+				-0.8
1,622,004	+				-2.0
1,622,004	+				-0.6
1,622,005	-				+1.1
1,622,005	-				+1.0
1,622,005	-				-2.5
1,622,005	-				-2.1
1,622,112	+		QEN71_RS07290	0.18	-2.3
1,622,112	+		QEN71_RS07290	0.18	+0.4
1,622,112	+		QEN71_RS07290	0.18	-0.7
1,622,113	-		QEN71_RS07290	0.18	-0.6
1,622,113	-		QEN71_RS07290	0.18	+0.4
1,622,153	+		QEN71_RS07290	0.25	+0.2
1,622,154	-		QEN71_RS07290	0.26	-2.7
1,622,154	-		QEN71_RS07290	0.26	-0.7
1,622,154	-		QEN71_RS07290	0.26	+3.2
1,622,154	-		QEN71_RS07290	0.26	-0.3
1,622,154	-		QEN71_RS07290	0.26	-0.5
1,622,154	-		QEN71_RS07290	0.26	-0.6
1,622,219	+		QEN71_RS07290	0.38	-1.1
1,622,219	+		QEN71_RS07290	0.38	+1.0
1,622,220	-		QEN71_RS07290	0.38	-0.8
1,622,220	-		QEN71_RS07290	0.38	+0.2
1,622,372	+		QEN71_RS07290	0.67	-0.8
1,622,372	+		QEN71_RS07290	0.67	-0.8
1,622,372	+		QEN71_RS07290	0.67	-0.7
1,622,372	+		QEN71_RS07290	0.67	-0.4
1,622,373	-		QEN71_RS07290	0.68	+0.5
1,622,373	-		QEN71_RS07290	0.68	+0.2
1,622,373	-		QEN71_RS07290	0.68	+0.6
1,622,373	-		QEN71_RS07290	0.68	+0.4
1,622,373	-		QEN71_RS07290	0.68	-0.6
1,622,373	-		QEN71_RS07290	0.68	+1.0
1,622,564	+				-0.6
1,622,564	+				+2.9
1,622,564	+				-0.2
1,622,564	+				-0.1
1,622,564	+				+0.7
1,622,564	+				-0.5
1,622,564	+				+0.5
1,622,564	+				-0.1
1,622,564	+				-1.3
1,622,564	+				+0.9
1,622,565	-				-1.7
1,622,565	-				-0.9
1,622,565	-				+0.4
1,622,565	-				+0.4
1,622,565	-				+0.3
1,622,565	-				-0.4
1,622,565	-				-0.6
1,622,566	+				+0.3
1,622,566	+				-0.4
1,622,566	+				+0.8
1,622,567	-				+0.3
1,622,567	-				-0.8
1,622,567	-				-0.6
1,622,567	-				-0.3
1,622,567	-				-0.2
1,622,567	-				-0.8
1,622,567	-				+1.0
1,622,567	-				+0.3
1,622,567	-				+0.8
1,622,573	+				+0.4
1,622,573	+				-2.1
1,622,619	+				+0.0
1,622,619	+				-0.2
1,622,620	-				+2.5
1,622,622	+				-1.0
1,622,622	+				+0.6
1,622,622	+				-0.3
1,622,622	+				+0.5
1,622,622	+				-1.0
1,622,622	+				-0.1
1,622,622	+				-1.1
1,622,622	+				-0.3
1,622,622	+				-0.4
1,622,622	+				+0.9
1,622,623	-				-0.1
1,622,623	-				-2.1
1,622,623	-				-2.6
1,622,625	+				-1.2
1,622,652	+				+0.8
1,622,652	+				+0.3
1,622,653	-				-0.1
1,622,668	+				+0.4
1,622,668	+				-0.4
1,622,668	+				-1.1
1,622,668	+				-0.2
1,622,668	+				+0.2
1,622,668	+				-0.8
1,622,668	+				-1.0
1,622,668	+				-0.6
1,622,668	+				+1.8
1,622,668	+				+0.1
1,622,668	+				+0.6
1,622,669	-				-1.6
1,622,669	-				+0.3
1,622,669	-				+1.2
1,622,669	-				-1.8
1,622,689	+				-0.7
1,622,689	+				+2.3
1,622,689	+				-0.4
1,622,690	-				-1.5
1,622,802	+		QEN71_RS07295	0.12	-0.3
1,622,802	+		QEN71_RS07295	0.12	+0.0
1,622,802	+		QEN71_RS07295	0.12	-0.3
1,622,802	+		QEN71_RS07295	0.12	-2.5