Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04475

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04465 and QEN71_RS04470 are separated by 71 nucleotidesQEN71_RS04470 and QEN71_RS04475 overlap by 1 nucleotidesQEN71_RS04475 and QEN71_RS04480 are separated by 72 nucleotides QEN71_RS04465: QEN71_RS04465 - DNA recombination protein RmuC, at 981,611 to 983,095 _RS04465 QEN71_RS04470: QEN71_RS04470 - GNAT family N-acetyltransferase, at 983,167 to 983,655 _RS04470 QEN71_RS04475: QEN71_RS04475 - hypothetical protein, at 983,655 to 983,930 _RS04475 QEN71_RS04480: QEN71_RS04480 - molybdopterin-binding protein, at 984,003 to 985,298 _RS04480 Position (kb) 983 984Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.661 kb on + strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.662 kb on - strand, within QEN71_RS04465at 982.678 kb on + strand, within QEN71_RS04465at 982.678 kb on + strand, within QEN71_RS04465at 982.679 kb on - strand, within QEN71_RS04465at 982.679 kb on - strand, within QEN71_RS04465at 982.679 kb on - strand, within QEN71_RS04465at 982.721 kb on + strand, within QEN71_RS04465at 982.721 kb on + strand, within QEN71_RS04465at 982.721 kb on + strand, within QEN71_RS04465at 982.721 kb on + strand, within QEN71_RS04465at 982.721 kb on + strand, within QEN71_RS04465at 982.722 kb on - strand, within QEN71_RS04465at 982.722 kb on - strand, within QEN71_RS04465at 982.722 kb on - strand, within QEN71_RS04465at 982.722 kb on - strand, within QEN71_RS04465at 982.722 kb on - strand, within QEN71_RS04465at 982.722 kb on - strand, within QEN71_RS04465at 982.773 kb on - strand, within QEN71_RS04465at 983.093 kb on + strandat 983.094 kb on - strandat 983.094 kb on - strandat 983.094 kb on - strandat 983.126 kb on - strandat 983.132 kb on + strandat 983.132 kb on + strandat 983.132 kb on + strandat 983.149 kb on + strandat 983.149 kb on + strandat 983.223 kb on + strand, within QEN71_RS04470at 983.223 kb on + strand, within QEN71_RS04470at 983.224 kb on - strand, within QEN71_RS04470at 983.224 kb on - strand, within QEN71_RS04470at 983.262 kb on - strand, within QEN71_RS04470at 983.262 kb on - strand, within QEN71_RS04470at 983.262 kb on - strand, within QEN71_RS04470at 983.262 kb on - strand, within QEN71_RS04470at 983.293 kb on + strand, within QEN71_RS04470at 983.294 kb on - strand, within QEN71_RS04470at 983.396 kb on + strand, within QEN71_RS04470at 983.396 kb on + strand, within QEN71_RS04470at 983.396 kb on + strand, within QEN71_RS04470at 983.396 kb on + strand, within QEN71_RS04470at 983.396 kb on + strand, within QEN71_RS04470at 983.396 kb on + strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.397 kb on - strand, within QEN71_RS04470at 983.411 kb on + strand, within QEN71_RS04470at 983.412 kb on - strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.441 kb on + strand, within QEN71_RS04470at 983.442 kb on - strand, within QEN71_RS04470at 983.442 kb on - strand, within QEN71_RS04470at 983.442 kb on - strand, within QEN71_RS04470at 983.442 kb on - strand, within QEN71_RS04470at 983.442 kb on - strand, within QEN71_RS04470at 983.442 kb on - strand, within QEN71_RS04470at 983.442 kb on - strand, within QEN71_RS04470at 983.445 kb on + strand, within QEN71_RS04470at 983.445 kb on + strand, within QEN71_RS04470at 983.445 kb on + strand, within QEN71_RS04470at 983.445 kb on + strand, within QEN71_RS04470at 983.446 kb on - strand, within QEN71_RS04470at 983.446 kb on - strand, within QEN71_RS04470at 983.446 kb on - strand, within QEN71_RS04470at 983.446 kb on - strand, within QEN71_RS04470at 983.594 kb on + strand, within QEN71_RS04470at 983.594 kb on + strand, within QEN71_RS04470at 983.594 kb on + strand, within QEN71_RS04470at 983.594 kb on + strand, within QEN71_RS04470at 983.594 kb on + strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.595 kb on - strand, within QEN71_RS04470at 983.656 kb on + strandat 983.656 kb on + strandat 983.656 kb on + strandat 983.656 kb on + strandat 983.656 kb on + strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.657 kb on - strandat 983.722 kb on + strand, within QEN71_RS04475at 983.722 kb on + strand, within QEN71_RS04475at 983.722 kb on + strand, within QEN71_RS04475at 983.722 kb on + strand, within QEN71_RS04475at 983.722 kb on + strand, within QEN71_RS04475at 983.722 kb on + strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.723 kb on - strand, within QEN71_RS04475at 983.870 kb on - strand, within QEN71_RS04475at 983.870 kb on - strand, within QEN71_RS04475at 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.932 kb on + strandat 983.933 kb on - strandat 983.933 kb on - strandat 983.933 kb on - strandat 983.933 kb on - strandat 983.933 kb on - strandat 983.933 kb on - strandat 983.933 kb on - strandat 983.933 kb on - strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.945 kb on + strandat 983.946 kb on - strandat 983.946 kb on - strandat 983.946 kb on - strandat 983.946 kb on - strandat 983.946 kb on - strandat 983.946 kb on - strandat 983.946 kb on - strandat 983.952 kb on + strandat 983.952 kb on + strandat 983.953 kb on - strandat 983.953 kb on - strandat 984.029 kb on + strandat 984.029 kb on + strandat 984.030 kb on - strandat 984.080 kb on + strandat 984.459 kb on + strand, within QEN71_RS04480at 984.459 kb on + strand, within QEN71_RS04480at 984.459 kb on + strand, within QEN71_RS04480at 984.459 kb on + strand, within QEN71_RS04480at 984.459 kb on + strand, within QEN71_RS04480at 984.459 kb on + strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.460 kb on - strand, within QEN71_RS04480at 984.634 kb on + strand, within QEN71_RS04480at 984.634 kb on + strand, within QEN71_RS04480at 984.635 kb on - strand, within QEN71_RS04480at 984.635 kb on - strand, within QEN71_RS04480at 984.635 kb on - strand, within QEN71_RS04480at 984.635 kb on - strand, within QEN71_RS04480at 984.649 kb on + strand, within QEN71_RS04480at 984.649 kb on + strand, within QEN71_RS04480at 984.650 kb on - strand, within QEN71_RS04480at 984.650 kb on - strand, within QEN71_RS04480at 984.860 kb on + strand, within QEN71_RS04480at 984.860 kb on + strand, within QEN71_RS04480at 984.861 kb on - strand, within QEN71_RS04480at 984.861 kb on - strand, within QEN71_RS04480

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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982,661 + QEN71_RS04465 0.71 -1.1
982,661 + QEN71_RS04465 0.71 +1.5
982,661 + QEN71_RS04465 0.71 -0.5
982,661 + QEN71_RS04465 0.71 -1.8
982,661 + QEN71_RS04465 0.71 +1.0
982,661 + QEN71_RS04465 0.71 -0.0
982,661 + QEN71_RS04465 0.71 -0.6
982,661 + QEN71_RS04465 0.71 -0.4
982,661 + QEN71_RS04465 0.71 +1.1
982,661 + QEN71_RS04465 0.71 -0.7
982,661 + QEN71_RS04465 0.71 -2.6
982,661 + QEN71_RS04465 0.71 -0.5
982,661 + QEN71_RS04465 0.71 +0.2
982,661 + QEN71_RS04465 0.71 -0.8
982,661 + QEN71_RS04465 0.71 -0.7
982,662 - QEN71_RS04465 0.71 -0.9
982,662 - QEN71_RS04465 0.71 -0.9
982,662 - QEN71_RS04465 0.71 -0.2
982,662 - QEN71_RS04465 0.71 -1.8
982,662 - QEN71_RS04465 0.71 -0.3
982,662 - QEN71_RS04465 0.71 -0.2
982,662 - QEN71_RS04465 0.71 -0.0
982,662 - QEN71_RS04465 0.71 -1.0
982,662 - QEN71_RS04465 0.71 -0.0
982,662 - QEN71_RS04465 0.71 +0.4
982,662 - QEN71_RS04465 0.71 -2.8
982,662 - QEN71_RS04465 0.71 -1.1
982,662 - QEN71_RS04465 0.71 +0.4
982,662 - QEN71_RS04465 0.71 -1.1
982,678 + QEN71_RS04465 0.72 +0.7
982,678 + QEN71_RS04465 0.72 -1.9
982,679 - QEN71_RS04465 0.72 +0.1
982,679 - QEN71_RS04465 0.72 +1.9
982,679 - QEN71_RS04465 0.72 -0.6
982,721 + QEN71_RS04465 0.75 +0.3
982,721 + QEN71_RS04465 0.75 +0.2
982,721 + QEN71_RS04465 0.75 +3.3
982,721 + QEN71_RS04465 0.75 +0.3
982,721 + QEN71_RS04465 0.75 -0.3
982,722 - QEN71_RS04465 0.75 -0.5
982,722 - QEN71_RS04465 0.75 -0.0
982,722 - QEN71_RS04465 0.75 +1.5
982,722 - QEN71_RS04465 0.75 +0.5
982,722 - QEN71_RS04465 0.75 -0.7
982,722 - QEN71_RS04465 0.75 -0.0
982,773 - QEN71_RS04465 0.78 -0.1
983,093 + +0.1
983,094 - +0.8
983,094 - -1.9
983,094 - +3.3
983,126 - -0.9
983,132 + -2.2
983,132 + +0.4
983,132 + +0.0
983,149 + +0.5
983,149 + -1.5
983,223 + QEN71_RS04470 0.11 +1.1
983,223 + QEN71_RS04470 0.11 -0.0
983,224 - QEN71_RS04470 0.12 -1.2
983,224 - QEN71_RS04470 0.12 +0.3
983,262 - QEN71_RS04470 0.19 -0.1
983,262 - QEN71_RS04470 0.19 +2.2
983,262 - QEN71_RS04470 0.19 -1.3
983,262 - QEN71_RS04470 0.19 -0.3
983,293 + QEN71_RS04470 0.26 -0.3
983,294 - QEN71_RS04470 0.26 -1.8
983,396 + QEN71_RS04470 0.47 -2.0
983,396 + QEN71_RS04470 0.47 -0.3
983,396 + QEN71_RS04470 0.47 -0.6
983,396 + QEN71_RS04470 0.47 -0.1
983,396 + QEN71_RS04470 0.47 -0.5
983,396 + QEN71_RS04470 0.47 +1.3
983,397 - QEN71_RS04470 0.47 -0.3
983,397 - QEN71_RS04470 0.47 -0.2
983,397 - QEN71_RS04470 0.47 -0.1
983,397 - QEN71_RS04470 0.47 +0.1
983,397 - QEN71_RS04470 0.47 -1.0
983,397 - QEN71_RS04470 0.47 +0.8
983,397 - QEN71_RS04470 0.47 +0.7
983,397 - QEN71_RS04470 0.47 -0.4
983,411 + QEN71_RS04470 0.50 +0.3
983,412 - QEN71_RS04470 0.50 -1.0
983,441 + QEN71_RS04470 0.56 -0.0
983,441 + QEN71_RS04470 0.56 +0.3
983,441 + QEN71_RS04470 0.56 +0.8
983,441 + QEN71_RS04470 0.56 -0.7
983,441 + QEN71_RS04470 0.56 -0.3
983,441 + QEN71_RS04470 0.56 -0.7
983,441 + QEN71_RS04470 0.56 -1.3
983,441 + QEN71_RS04470 0.56 -0.2
983,441 + QEN71_RS04470 0.56 +0.2
983,441 + QEN71_RS04470 0.56 -1.1
983,441 + QEN71_RS04470 0.56 -0.3
983,442 - QEN71_RS04470 0.56 -0.1
983,442 - QEN71_RS04470 0.56 +0.8
983,442 - QEN71_RS04470 0.56 +0.9
983,442 - QEN71_RS04470 0.56 +0.2
983,442 - QEN71_RS04470 0.56 -0.3
983,442 - QEN71_RS04470 0.56 -0.2
983,442 - QEN71_RS04470 0.56 -1.0
983,445 + QEN71_RS04470 0.57 -1.5
983,445 + QEN71_RS04470 0.57 +0.9
983,445 + QEN71_RS04470 0.57 +1.9
983,445 + QEN71_RS04470 0.57 -0.0
983,446 - QEN71_RS04470 0.57 -0.2
983,446 - QEN71_RS04470 0.57 +2.6
983,446 - QEN71_RS04470 0.57 -1.0
983,446 - QEN71_RS04470 0.57 +0.3
983,594 + QEN71_RS04470 0.87 +0.3
983,594 + QEN71_RS04470 0.87 -2.2
983,594 + QEN71_RS04470 0.87 +0.1
983,594 + QEN71_RS04470 0.87 +0.2
983,594 + QEN71_RS04470 0.87 -0.3
983,595 - QEN71_RS04470 0.88 +0.1
983,595 - QEN71_RS04470 0.88 +2.0
983,595 - QEN71_RS04470 0.88 +0.3
983,595 - QEN71_RS04470 0.88 +0.8
983,595 - QEN71_RS04470 0.88 +0.5
983,595 - QEN71_RS04470 0.88 +1.0
983,595 - QEN71_RS04470 0.88 -2.1
983,595 - QEN71_RS04470 0.88 -0.5
983,595 - QEN71_RS04470 0.88 -1.0
983,595 - QEN71_RS04470 0.88 -0.3
983,595 - QEN71_RS04470 0.88 +0.2
983,595 - QEN71_RS04470 0.88 -1.8
983,595 - QEN71_RS04470 0.88 +1.0
983,656 + +0.2
983,656 + -0.7
983,656 + -0.7
983,656 + +1.0
983,656 + +0.5
983,657 - -1.5
983,657 - -1.5
983,657 - -0.0
983,657 - +0.3
983,657 - +0.5
983,657 - -0.2
983,657 - +0.1
983,657 - +0.9
983,657 - -0.3
983,657 - -0.5
983,722 + QEN71_RS04475 0.24 -2.7
983,722 + QEN71_RS04475 0.24 -0.2
983,722 + QEN71_RS04475 0.24 +0.9
983,722 + QEN71_RS04475 0.24 +1.6
983,722 + QEN71_RS04475 0.24 -0.1
983,722 + QEN71_RS04475 0.24 +0.9
983,723 - QEN71_RS04475 0.25 +0.3
983,723 - QEN71_RS04475 0.25 -1.1
983,723 - QEN71_RS04475 0.25 +2.0
983,723 - QEN71_RS04475 0.25 -0.3
983,723 - QEN71_RS04475 0.25 -0.9
983,723 - QEN71_RS04475 0.25 +0.3
983,723 - QEN71_RS04475 0.25 -4.2
983,723 - QEN71_RS04475 0.25 -0.9
983,723 - QEN71_RS04475 0.25 -0.6
983,870 - QEN71_RS04475 0.78 -2.0
983,870 - QEN71_RS04475 0.78 +3.1
983,932 + -1.7
983,932 + +1.4
983,932 + -2.2
983,932 + +0.1
983,932 + +0.1
983,932 + -0.0
983,932 + +1.0
983,932 + +1.0
983,932 + -0.3
983,932 + +0.7
983,932 + +1.6
983,932 + -0.5
983,932 + +0.7
983,933 - -1.4
983,933 - -0.3
983,933 - -0.6
983,933 - -1.2
983,933 - +0.7
983,933 - -0.1
983,933 - -1.2
983,933 - +1.2
983,945 + +1.1
983,945 + -0.0
983,945 + +0.6
983,945 + -0.4
983,945 + +2.3
983,945 + -0.6
983,945 + -0.0
983,945 + -0.3
983,945 + -0.2
983,946 - -1.0
983,946 - +2.6
983,946 - -0.1
983,946 - +0.2
983,946 - +0.5
983,946 - -0.1
983,946 - +0.4
983,952 + +0.1
983,952 + -1.8
983,953 - +0.1
983,953 - -1.4
984,029 + -1.8
984,029 + -1.8
984,030 - -2.7
984,080 + -0.9
984,459 + QEN71_RS04480 0.35 +0.1
984,459 + QEN71_RS04480 0.35 +1.0
984,459 + QEN71_RS04480 0.35 -0.9
984,459 + QEN71_RS04480 0.35 -0.3
984,459 + QEN71_RS04480 0.35 -0.3
984,459 + QEN71_RS04480 0.35 -0.9
984,460 - QEN71_RS04480 0.35 -1.7
984,460 - QEN71_RS04480 0.35 -0.7
984,460 - QEN71_RS04480 0.35 -0.7
984,460 - QEN71_RS04480 0.35 -0.5
984,460 - QEN71_RS04480 0.35 -1.2
984,460 - QEN71_RS04480 0.35 -0.9
984,460 - QEN71_RS04480 0.35 -0.3
984,460 - QEN71_RS04480 0.35 -1.5
984,460 - QEN71_RS04480 0.35 -0.0
984,460 - QEN71_RS04480 0.35 -1.6
984,460 - QEN71_RS04480 0.35 +0.9
984,460 - QEN71_RS04480 0.35 -0.1
984,460 - QEN71_RS04480 0.35 -0.5
984,460 - QEN71_RS04480 0.35 -0.8
984,634 + QEN71_RS04480 0.49 -2.9
984,634 + QEN71_RS04480 0.49 +1.1
984,635 - QEN71_RS04480 0.49 -0.6
984,635 - QEN71_RS04480 0.49 -2.6
984,635 - QEN71_RS04480 0.49 -3.6
984,635 - QEN71_RS04480 0.49 -0.6
984,649 + QEN71_RS04480 0.50 -0.0
984,649 + QEN71_RS04480 0.50 -0.5
984,650 - QEN71_RS04480 0.50 +1.7
984,650 - QEN71_RS04480 0.50 -1.3
984,860 + QEN71_RS04480 0.66 +1.0
984,860 + QEN71_RS04480 0.66 +0.3
984,861 - QEN71_RS04480 0.66 +1.0
984,861 - QEN71_RS04480 0.66 +0.7

Or see this region's nucleotide sequence