Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03380 and QEN71_RS03385 are separated by 485 nucleotides QEN71_RS03385 and QEN71_RS03390 are separated by 36 nucleotides QEN71_RS03390 and QEN71_RS03395 are separated by 9 nucleotides
QEN71_RS03380: QEN71_RS03380 - thioredoxin-disulfide reductase, at 750,980 to 751,987
_RS03380
QEN71_RS03385: QEN71_RS03385 - DNA translocase FtsK, at 752,473 to 754,788
_RS03385
QEN71_RS03390: QEN71_RS03390 - outer membrane lipoprotein chaperone LolA, at 754,825 to 755,520
_RS03390
QEN71_RS03395: QEN71_RS03395 - LysR family transcriptional regulator, at 755,530 to 756,444
_RS03395
Position (kb) 752
753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.083 kb on - strand at 752.102 kb on - strand at 752.102 kb on - strand at 752.102 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.105 kb on - strand at 752.106 kb on + strand at 752.106 kb on + strand at 752.106 kb on + strand at 752.106 kb on + strand at 752.106 kb on + strand at 752.106 kb on + strand at 752.106 kb on + strand at 752.106 kb on + strand at 752.107 kb on - strand at 752.107 kb on - strand at 752.107 kb on - strand at 752.107 kb on - strand at 752.141 kb on + strand at 752.141 kb on + strand at 752.141 kb on + strand at 752.141 kb on + strand at 752.141 kb on + strand at 752.141 kb on + strand at 752.142 kb on - strand at 752.142 kb on - strand at 752.173 kb on + strand at 752.173 kb on + strand at 752.183 kb on - strand at 752.191 kb on + strand at 752.239 kb on + strand at 752.240 kb on - strand at 752.248 kb on + strand at 752.288 kb on - strand at 752.288 kb on - strand at 752.288 kb on - strand at 752.288 kb on - strand at 752.313 kb on + strand at 752.313 kb on + strand at 752.313 kb on + strand at 752.313 kb on + strand at 752.313 kb on + strand at 752.314 kb on - strand at 752.314 kb on - strand at 752.314 kb on - strand at 752.314 kb on - strand at 752.318 kb on + strand at 752.318 kb on + strand at 752.319 kb on - strand at 752.319 kb on - strand at 752.488 kb on + strand at 752.488 kb on + strand at 752.488 kb on + strand at 752.488 kb on + strand at 752.489 kb on - strand at 752.489 kb on - strand at 752.599 kb on + strand at 752.599 kb on + strand at 752.599 kb on + strand at 752.600 kb on - strand at 752.600 kb on - strand at 752.600 kb on - strand at 752.600 kb on - strand at 752.600 kb on - strand at 752.600 kb on - strand at 752.677 kb on + strand at 752.677 kb on + strand at 752.677 kb on + strand at 752.678 kb on - strand at 752.678 kb on - strand at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.761 kb on + strand, within QEN71_RS03385 at 752.762 kb on - strand, within QEN71_RS03385 at 752.762 kb on - strand, within QEN71_RS03385 at 752.762 kb on - strand, within QEN71_RS03385 at 752.762 kb on - strand, within QEN71_RS03385 at 752.762 kb on - strand, within QEN71_RS03385 at 753.025 kb on + strand, within QEN71_RS03385 at 753.026 kb on - strand, within QEN71_RS03385 at 753.026 kb on - strand, within QEN71_RS03385 at 753.439 kb on + strand, within QEN71_RS03385 at 753.439 kb on + strand, within QEN71_RS03385 at 753.463 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.583 kb on + strand, within QEN71_RS03385 at 753.584 kb on - strand, within QEN71_RS03385 at 753.584 kb on - strand, within QEN71_RS03385 at 753.599 kb on + strand, within QEN71_RS03385 at 753.599 kb on + strand, within QEN71_RS03385 at 753.600 kb on - strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.814 kb on + strand, within QEN71_RS03385 at 753.815 kb on - strand, within QEN71_RS03385 at 753.815 kb on - strand, within QEN71_RS03385 at 753.815 kb on - strand, within QEN71_RS03385 at 753.815 kb on - strand, within QEN71_RS03385 at 753.815 kb on - strand, within QEN71_RS03385 at 753.815 kb on - strand, within QEN71_RS03385 at 753.815 kb on - strand, within QEN71_RS03385 at 753.880 kb on + strand, within QEN71_RS03385 at 753.881 kb on - strand, within QEN71_RS03385 at 753.976 kb on + strand, within QEN71_RS03385 at 754.066 kb on - strand, within QEN71_RS03385 at 754.066 kb on - strand, within QEN71_RS03385 at 754.066 kb on - strand, within QEN71_RS03385 at 754.275 kb on + strand, within QEN71_RS03385 at 754.275 kb on + strand, within QEN71_RS03385 at 754.276 kb on - strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.390 kb on + strand, within QEN71_RS03385 at 754.391 kb on - strand, within QEN71_RS03385 at 754.391 kb on - strand, within QEN71_RS03385 at 754.391 kb on - strand, within QEN71_RS03385 at 754.809 kb on + strand at 754.809 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 755.519 kb on - strand at 755.519 kb on - strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.568 kb on + strand at 755.568 kb on + strand at 755.569 kb on - strand at 755.577 kb on + strand at 755.624 kb on + strand, within QEN71_RS03395 at 755.625 kb on + strand, within QEN71_RS03395 at 755.625 kb on + strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.691 kb on - strand, within QEN71_RS03395 at 755.691 kb on - strand, within QEN71_RS03395 at 755.718 kb on - strand, within QEN71_RS03395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 752,083 - -0.3 752,083 - -0.4 752,083 - -1.1 752,083 - -0.7 752,083 - -0.6 752,083 - +1.0 752,083 - -0.7 752,083 - +0.3 752,083 - -0.2 752,083 - -1.5 752,083 - -2.4 752,083 - -0.5 752,083 - -2.0 752,083 - -0.7 752,102 - -0.7 752,102 - -1.0 752,102 - -0.2 752,105 - +1.0 752,105 - +2.5 752,105 - +0.8 752,105 - +0.7 752,105 - +0.7 752,105 - -1.5 752,105 - -2.0 752,105 - +0.4 752,105 - +0.6 752,105 - -0.5 752,105 - +0.3 752,105 - -0.5 752,106 + -1.8 752,106 + -0.1 752,106 + +0.1 752,106 + -0.2 752,106 + -0.5 752,106 + +0.0 752,106 + +0.3 752,106 + -0.7 752,107 - +0.5 752,107 - +0.1 752,107 - -0.1 752,107 - -0.7 752,141 + -1.7 752,141 + -0.1 752,141 + -1.1 752,141 + -0.1 752,141 + -0.3 752,141 + -0.0 752,142 - -0.1 752,142 - -1.7 752,173 + +1.9 752,173 + -0.8 752,183 - +0.5 752,191 + -0.7 752,239 + +0.1 752,240 - -0.8 752,248 + +0.8 752,288 - +2.2 752,288 - +1.5 752,288 - -0.4 752,288 - +0.8 752,313 + -0.7 752,313 + -0.1 752,313 + +0.8 752,313 + +1.2 752,313 + +0.0 752,314 - +0.4 752,314 - -2.9 752,314 - +0.6 752,314 - +1.6 752,318 + -0.9 752,318 + +1.2 752,319 - -0.8 752,319 - -1.0 752,488 + -1.4 752,488 + -1.0 752,488 + -2.0 752,488 + +0.3 752,489 - -0.7 752,489 - -0.5 752,599 + -1.5 752,599 + +0.8 752,599 + -0.7 752,600 - -3.3 752,600 - -0.5 752,600 - +0.8 752,600 - +0.3 752,600 - -0.8 752,600 - -0.7 752,677 + -1.0 752,677 + -2.9 752,677 + -0.8 752,678 - -0.2 752,678 - -1.4 752,761 + QEN71_RS03385 0.12 -1.7 752,761 + QEN71_RS03385 0.12 -2.2 752,761 + QEN71_RS03385 0.12 -1.6 752,761 + QEN71_RS03385 0.12 -0.2 752,761 + QEN71_RS03385 0.12 -1.8 752,761 + QEN71_RS03385 0.12 -0.2 752,761 + QEN71_RS03385 0.12 +0.0 752,761 + QEN71_RS03385 0.12 +0.0 752,761 + QEN71_RS03385 0.12 -2.0 752,761 + QEN71_RS03385 0.12 +0.3 752,761 + QEN71_RS03385 0.12 +0.3 752,762 - QEN71_RS03385 0.12 -0.2 752,762 - QEN71_RS03385 0.12 -1.0 752,762 - QEN71_RS03385 0.12 -1.0 752,762 - QEN71_RS03385 0.12 -2.2 752,762 - QEN71_RS03385 0.12 -1.8 753,025 + QEN71_RS03385 0.24 +0.6 753,026 - QEN71_RS03385 0.24 -0.2 753,026 - QEN71_RS03385 0.24 -1.6 753,439 + QEN71_RS03385 0.42 +0.0 753,439 + QEN71_RS03385 0.42 -0.2 753,463 + QEN71_RS03385 0.43 -0.8 753,583 + QEN71_RS03385 0.48 -2.2 753,583 + QEN71_RS03385 0.48 -0.2 753,583 + QEN71_RS03385 0.48 +0.3 753,583 + QEN71_RS03385 0.48 -1.6 753,583 + QEN71_RS03385 0.48 -1.5 753,583 + QEN71_RS03385 0.48 -0.2 753,583 + QEN71_RS03385 0.48 -1.7 753,583 + QEN71_RS03385 0.48 +0.3 753,583 + QEN71_RS03385 0.48 -1.6 753,584 - QEN71_RS03385 0.48 -0.7 753,584 - QEN71_RS03385 0.48 -2.6 753,599 + QEN71_RS03385 0.49 -1.2 753,599 + QEN71_RS03385 0.49 -1.4 753,600 - QEN71_RS03385 0.49 -1.0 753,814 + QEN71_RS03385 0.58 +0.3 753,814 + QEN71_RS03385 0.58 -0.2 753,814 + QEN71_RS03385 0.58 -0.7 753,814 + QEN71_RS03385 0.58 -1.0 753,814 + QEN71_RS03385 0.58 +0.3 753,814 + QEN71_RS03385 0.58 -2.5 753,814 + QEN71_RS03385 0.58 -1.0 753,814 + QEN71_RS03385 0.58 -0.5 753,814 + QEN71_RS03385 0.58 -0.5 753,814 + QEN71_RS03385 0.58 -0.7 753,815 - QEN71_RS03385 0.58 -1.1 753,815 - QEN71_RS03385 0.58 -1.0 753,815 - QEN71_RS03385 0.58 -0.7 753,815 - QEN71_RS03385 0.58 -1.0 753,815 - QEN71_RS03385 0.58 -1.0 753,815 - QEN71_RS03385 0.58 -1.2 753,815 - QEN71_RS03385 0.58 -2.7 753,880 + QEN71_RS03385 0.61 -0.2 753,881 - QEN71_RS03385 0.61 -0.5 753,976 + QEN71_RS03385 0.65 -0.6 754,066 - QEN71_RS03385 0.69 +0.3 754,066 - QEN71_RS03385 0.69 -1.4 754,066 - QEN71_RS03385 0.69 -2.9 754,275 + QEN71_RS03385 0.78 +0.0 754,275 + QEN71_RS03385 0.78 -0.5 754,276 - QEN71_RS03385 0.78 -0.2 754,390 + QEN71_RS03385 0.83 -1.6 754,390 + QEN71_RS03385 0.83 -1.6 754,390 + QEN71_RS03385 0.83 -1.5 754,390 + QEN71_RS03385 0.83 -2.1 754,390 + QEN71_RS03385 0.83 -0.2 754,390 + QEN71_RS03385 0.83 -1.0 754,390 + QEN71_RS03385 0.83 -1.4 754,390 + QEN71_RS03385 0.83 +0.0 754,390 + QEN71_RS03385 0.83 -0.5 754,391 - QEN71_RS03385 0.83 -1.2 754,391 - QEN71_RS03385 0.83 +0.1 754,391 - QEN71_RS03385 0.83 +0.3 754,809 + -1.4 754,809 + -0.2 754,822 + +1.0 754,822 + +1.3 754,822 + -1.7 754,822 + +1.1 754,822 + +0.5 755,519 - -1.6 755,519 - +0.9 755,539 + -0.0 755,539 + -0.6 755,539 + +0.5 755,539 + +0.1 755,539 + +1.4 755,539 + -3.1 755,539 + -0.9 755,539 + -1.0 755,539 + -1.5 755,539 + -0.7 755,540 - +1.1 755,540 - +0.6 755,540 - -0.6 755,540 - -0.6 755,540 - -1.2 755,540 - -1.0 755,540 - -0.7 755,540 - -0.8 755,568 + +0.8 755,568 + -0.3 755,569 - -0.3 755,577 + -0.2 755,624 + QEN71_RS03395 0.10 +1.5 755,625 + QEN71_RS03395 0.10 -1.5 755,625 + QEN71_RS03395 0.10 +0.5 755,626 - QEN71_RS03395 0.10 +1.4 755,626 - QEN71_RS03395 0.10 +1.1 755,626 - QEN71_RS03395 0.10 +0.2 755,626 - QEN71_RS03395 0.10 -1.7 755,626 - QEN71_RS03395 0.10 -0.8 755,690 + QEN71_RS03395 0.17 -2.5 755,690 + QEN71_RS03395 0.17 +1.3 755,690 + QEN71_RS03395 0.17 +0.3 755,690 + QEN71_RS03395 0.17 -1.2 755,691 - QEN71_RS03395 0.18 +1.3 755,691 - QEN71_RS03395 0.18 +1.5 755,718 - QEN71_RS03395 0.21 -0.7
Or see this region's nucleotide sequence