Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03175 and QEN71_RS03180 are separated by 114 nucleotides QEN71_RS03180 and QEN71_RS03185 are separated by 38 nucleotides
QEN71_RS03175: QEN71_RS03175 - PLP-dependent aminotransferase family protein, at 707,721 to 709,151
_RS03175
QEN71_RS03180: QEN71_RS03180 - MFS transporter, at 709,266 to 710,519
_RS03180
QEN71_RS03185: QEN71_RS03185 - alpha/beta hydrolase, at 710,558 to 711,493
_RS03185
Position (kb) 709
710
711 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 708.309 kb on - strand, within QEN71_RS03175 at 708.333 kb on + strand, within QEN71_RS03175 at 708.488 kb on + strand, within QEN71_RS03175 at 708.489 kb on - strand, within QEN71_RS03175 at 708.684 kb on + strand, within QEN71_RS03175 at 708.685 kb on - strand, within QEN71_RS03175 at 709.140 kb on + strand at 709.140 kb on + strand at 709.140 kb on + strand at 709.140 kb on + strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.482 kb on + strand, within QEN71_RS03180 at 709.483 kb on - strand, within QEN71_RS03180 at 709.638 kb on + strand, within QEN71_RS03180 at 709.709 kb on + strand, within QEN71_RS03180 at 709.709 kb on + strand, within QEN71_RS03180 at 709.710 kb on - strand, within QEN71_RS03180 at 709.710 kb on - strand, within QEN71_RS03180 at 709.794 kb on + strand, within QEN71_RS03180 at 709.795 kb on - strand, within QEN71_RS03180 at 709.795 kb on - strand, within QEN71_RS03180 at 709.795 kb on - strand, within QEN71_RS03180 at 709.960 kb on + strand, within QEN71_RS03180 at 709.961 kb on - strand, within QEN71_RS03180 at 709.961 kb on - strand, within QEN71_RS03180 at 709.961 kb on - strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.998 kb on + strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 709.999 kb on - strand, within QEN71_RS03180 at 710.007 kb on + strand, within QEN71_RS03180 at 710.008 kb on - strand, within QEN71_RS03180 at 710.064 kb on + strand, within QEN71_RS03180 at 710.292 kb on - strand, within QEN71_RS03180 at 710.292 kb on - strand, within QEN71_RS03180 at 710.343 kb on + strand, within QEN71_RS03180 at 710.343 kb on + strand, within QEN71_RS03180 at 710.343 kb on + strand, within QEN71_RS03180 at 710.343 kb on + strand, within QEN71_RS03180 at 710.343 kb on + strand, within QEN71_RS03180 at 710.344 kb on - strand, within QEN71_RS03180 at 710.344 kb on - strand, within QEN71_RS03180 at 710.537 kb on - strand at 710.559 kb on + strand at 710.559 kb on + strand at 710.559 kb on + strand at 710.559 kb on + strand at 710.560 kb on - strand at 710.560 kb on - strand at 710.560 kb on - strand at 710.560 kb on - strand at 710.560 kb on - strand at 710.730 kb on + strand, within QEN71_RS03185 at 710.730 kb on + strand, within QEN71_RS03185 at 710.730 kb on + strand, within QEN71_RS03185 at 710.730 kb on + strand, within QEN71_RS03185 at 710.730 kb on + strand, within QEN71_RS03185 at 710.730 kb on + strand, within QEN71_RS03185 at 710.730 kb on + strand, within QEN71_RS03185 at 710.730 kb on + strand, within QEN71_RS03185 at 710.731 kb on - strand, within QEN71_RS03185 at 710.731 kb on - strand, within QEN71_RS03185 at 710.731 kb on - strand, within QEN71_RS03185 at 710.731 kb on - strand, within QEN71_RS03185 at 710.731 kb on - strand, within QEN71_RS03185 at 710.731 kb on - strand, within QEN71_RS03185 at 710.731 kb on - strand, within QEN71_RS03185 at 710.746 kb on - strand, within QEN71_RS03185 at 710.862 kb on + strand, within QEN71_RS03185 at 710.863 kb on - strand, within QEN71_RS03185 at 710.863 kb on - strand, within QEN71_RS03185 at 710.991 kb on + strand, within QEN71_RS03185 at 710.991 kb on + strand, within QEN71_RS03185 at 710.991 kb on + strand, within QEN71_RS03185 at 710.991 kb on + strand, within QEN71_RS03185 at 710.991 kb on + strand, within QEN71_RS03185 at 710.991 kb on + strand, within QEN71_RS03185 at 710.992 kb on - strand, within QEN71_RS03185 at 710.992 kb on - strand, within QEN71_RS03185 at 711.040 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.233 kb on + strand, within QEN71_RS03185 at 711.234 kb on - strand, within QEN71_RS03185 at 711.234 kb on - strand, within QEN71_RS03185 at 711.234 kb on - strand, within QEN71_RS03185 at 711.234 kb on - strand, within QEN71_RS03185 at 711.471 kb on + strand at 711.471 kb on + strand at 711.471 kb on + strand at 711.471 kb on + strand at 711.472 kb on - strand at 711.472 kb on - strand at 711.472 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 708,309 - QEN71_RS03175 0.41 -0.2 708,333 + QEN71_RS03175 0.43 +2.4 708,488 + QEN71_RS03175 0.54 -0.6 708,489 - QEN71_RS03175 0.54 +1.2 708,684 + QEN71_RS03175 0.67 +0.2 708,685 - QEN71_RS03175 0.67 +0.4 709,140 + -0.8 709,140 + +1.0 709,140 + -0.6 709,140 + -0.5 709,141 - +0.6 709,141 - +0.9 709,482 + QEN71_RS03180 0.17 -1.3 709,482 + QEN71_RS03180 0.17 +3.3 709,482 + QEN71_RS03180 0.17 -0.6 709,482 + QEN71_RS03180 0.17 -0.9 709,482 + QEN71_RS03180 0.17 +0.0 709,482 + QEN71_RS03180 0.17 -0.8 709,482 + QEN71_RS03180 0.17 +1.2 709,482 + QEN71_RS03180 0.17 +0.9 709,482 + QEN71_RS03180 0.17 +0.7 709,482 + QEN71_RS03180 0.17 -1.4 709,482 + QEN71_RS03180 0.17 -0.5 709,483 - QEN71_RS03180 0.17 +1.3 709,638 + QEN71_RS03180 0.30 +0.0 709,709 + QEN71_RS03180 0.35 -1.0 709,709 + QEN71_RS03180 0.35 +0.0 709,710 - QEN71_RS03180 0.35 +0.4 709,710 - QEN71_RS03180 0.35 -0.1 709,794 + QEN71_RS03180 0.42 +0.7 709,795 - QEN71_RS03180 0.42 -1.8 709,795 - QEN71_RS03180 0.42 -0.9 709,795 - QEN71_RS03180 0.42 +0.4 709,960 + QEN71_RS03180 0.55 -0.7 709,961 - QEN71_RS03180 0.55 -1.1 709,961 - QEN71_RS03180 0.55 -1.4 709,961 - QEN71_RS03180 0.55 +0.0 709,998 + QEN71_RS03180 0.58 -0.5 709,998 + QEN71_RS03180 0.58 -0.4 709,998 + QEN71_RS03180 0.58 -1.0 709,998 + QEN71_RS03180 0.58 -1.9 709,998 + QEN71_RS03180 0.58 +0.1 709,998 + QEN71_RS03180 0.58 +1.5 709,998 + QEN71_RS03180 0.58 +0.5 709,998 + QEN71_RS03180 0.58 -1.6 709,998 + QEN71_RS03180 0.58 -0.8 709,999 - QEN71_RS03180 0.58 +0.3 709,999 - QEN71_RS03180 0.58 +1.2 709,999 - QEN71_RS03180 0.58 +0.4 709,999 - QEN71_RS03180 0.58 +1.0 709,999 - QEN71_RS03180 0.58 +0.3 709,999 - QEN71_RS03180 0.58 -0.5 709,999 - QEN71_RS03180 0.58 -0.6 709,999 - QEN71_RS03180 0.58 +0.0 709,999 - QEN71_RS03180 0.58 -1.2 709,999 - QEN71_RS03180 0.58 +0.0 709,999 - QEN71_RS03180 0.58 -0.5 709,999 - QEN71_RS03180 0.58 -0.0 710,007 + QEN71_RS03180 0.59 +0.2 710,008 - QEN71_RS03180 0.59 -0.0 710,064 + QEN71_RS03180 0.64 -2.5 710,292 - QEN71_RS03180 0.82 +1.6 710,292 - QEN71_RS03180 0.82 +0.4 710,343 + QEN71_RS03180 0.86 -0.6 710,343 + QEN71_RS03180 0.86 +0.7 710,343 + QEN71_RS03180 0.86 +1.0 710,343 + QEN71_RS03180 0.86 +0.0 710,343 + QEN71_RS03180 0.86 -0.6 710,344 - QEN71_RS03180 0.86 +1.5 710,344 - QEN71_RS03180 0.86 -1.8 710,537 - -1.6 710,559 + -0.2 710,559 + +0.5 710,559 + +0.5 710,559 + +2.4 710,560 - +0.4 710,560 - +1.8 710,560 - +0.2 710,560 - -0.3 710,560 - +0.1 710,730 + QEN71_RS03185 0.18 -0.8 710,730 + QEN71_RS03185 0.18 -0.2 710,730 + QEN71_RS03185 0.18 -0.8 710,730 + QEN71_RS03185 0.18 -0.4 710,730 + QEN71_RS03185 0.18 -0.8 710,730 + QEN71_RS03185 0.18 -0.7 710,730 + QEN71_RS03185 0.18 -0.1 710,730 + QEN71_RS03185 0.18 -0.6 710,731 - QEN71_RS03185 0.18 -0.5 710,731 - QEN71_RS03185 0.18 +1.1 710,731 - QEN71_RS03185 0.18 -3.2 710,731 - QEN71_RS03185 0.18 -1.0 710,731 - QEN71_RS03185 0.18 +1.6 710,731 - QEN71_RS03185 0.18 +0.4 710,731 - QEN71_RS03185 0.18 -0.6 710,746 - QEN71_RS03185 0.20 -0.8 710,862 + QEN71_RS03185 0.32 -0.3 710,863 - QEN71_RS03185 0.33 -0.8 710,863 - QEN71_RS03185 0.33 -0.9 710,991 + QEN71_RS03185 0.46 +0.2 710,991 + QEN71_RS03185 0.46 -2.0 710,991 + QEN71_RS03185 0.46 +0.4 710,991 + QEN71_RS03185 0.46 +0.7 710,991 + QEN71_RS03185 0.46 +1.7 710,991 + QEN71_RS03185 0.46 -0.3 710,992 - QEN71_RS03185 0.46 -0.2 710,992 - QEN71_RS03185 0.46 +1.9 711,040 + QEN71_RS03185 0.51 -1.1 711,233 + QEN71_RS03185 0.72 -0.6 711,233 + QEN71_RS03185 0.72 -1.2 711,233 + QEN71_RS03185 0.72 -0.8 711,233 + QEN71_RS03185 0.72 -0.9 711,233 + QEN71_RS03185 0.72 -0.6 711,233 + QEN71_RS03185 0.72 +0.4 711,233 + QEN71_RS03185 0.72 +0.4 711,233 + QEN71_RS03185 0.72 +0.5 711,233 + QEN71_RS03185 0.72 +1.2 711,233 + QEN71_RS03185 0.72 +0.5 711,233 + QEN71_RS03185 0.72 -0.1 711,233 + QEN71_RS03185 0.72 -0.5 711,234 - QEN71_RS03185 0.72 +0.5 711,234 - QEN71_RS03185 0.72 -1.0 711,234 - QEN71_RS03185 0.72 +0.4 711,234 - QEN71_RS03185 0.72 -1.2 711,471 + -1.0 711,471 + -1.6 711,471 + -1.9 711,471 + -0.8 711,472 - +1.4 711,472 - -0.4 711,472 - +0.8
Or see this region's nucleotide sequence