Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02710

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02705 and QEN71_RS02710 are separated by 176 nucleotidesQEN71_RS02710 and QEN71_RS02715 are separated by 169 nucleotides QEN71_RS02705: QEN71_RS02705 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 606,990 to 608,204 _RS02705 QEN71_RS02710: QEN71_RS02710 - pyridoxamine 5'-phosphate oxidase, at 608,381 to 609,019 _RS02710 QEN71_RS02715: QEN71_RS02715 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 609,189 to 610,049 _RS02715 Position (kb) 608 609 610Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 607.441 kb on + strand, within QEN71_RS02705at 607.441 kb on + strand, within QEN71_RS02705at 607.441 kb on + strand, within QEN71_RS02705at 607.442 kb on - strand, within QEN71_RS02705at 607.523 kb on - strand, within QEN71_RS02705at 607.780 kb on + strand, within QEN71_RS02705at 607.781 kb on - strand, within QEN71_RS02705at 607.792 kb on + strand, within QEN71_RS02705at 607.792 kb on + strand, within QEN71_RS02705at 607.792 kb on + strand, within QEN71_RS02705at 607.793 kb on - strand, within QEN71_RS02705at 607.793 kb on - strand, within QEN71_RS02705at 607.793 kb on - strand, within QEN71_RS02705at 607.793 kb on - strand, within QEN71_RS02705at 607.793 kb on - strand, within QEN71_RS02705at 607.822 kb on + strand, within QEN71_RS02705at 607.822 kb on + strand, within QEN71_RS02705at 607.823 kb on - strand, within QEN71_RS02705at 607.823 kb on - strand, within QEN71_RS02705at 607.823 kb on - strand, within QEN71_RS02705at 607.823 kb on - strand, within QEN71_RS02705at 607.843 kb on + strand, within QEN71_RS02705at 607.843 kb on + strand, within QEN71_RS02705at 607.844 kb on - strand, within QEN71_RS02705at 607.844 kb on - strand, within QEN71_RS02705at 607.844 kb on - strand, within QEN71_RS02705at 607.844 kb on - strand, within QEN71_RS02705at 607.844 kb on - strand, within QEN71_RS02705at 607.844 kb on - strand, within QEN71_RS02705at 607.850 kb on - strand, within QEN71_RS02705at 607.891 kb on + strand, within QEN71_RS02705at 607.948 kb on + strand, within QEN71_RS02705at 607.948 kb on + strand, within QEN71_RS02705at 607.949 kb on - strand, within QEN71_RS02705at 607.955 kb on + strand, within QEN71_RS02705at 608.005 kb on + strand, within QEN71_RS02705at 608.006 kb on - strand, within QEN71_RS02705at 608.147 kb on + strandat 608.148 kb on - strandat 608.163 kb on + strandat 608.164 kb on - strandat 608.164 kb on - strandat 608.173 kb on - strandat 608.173 kb on - strandat 608.173 kb on - strandat 609.020 kb on - strandat 609.020 kb on - strandat 609.020 kb on - strandat 609.026 kb on - strandat 609.026 kb on - strandat 609.026 kb on - strandat 609.037 kb on - strandat 609.037 kb on - strandat 609.037 kb on - strandat 609.052 kb on + strandat 609.052 kb on + strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.158 kb on - strandat 609.158 kb on - strandat 609.181 kb on + strandat 609.181 kb on + strandat 609.181 kb on + strandat 609.181 kb on + strandat 609.181 kb on + strandat 609.181 kb on + strandat 609.181 kb on + strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.224 kb on + strandat 609.224 kb on + strandat 609.224 kb on + strandat 609.224 kb on + strandat 609.225 kb on - strandat 609.225 kb on - strandat 609.225 kb on - strandat 609.225 kb on - strandat 609.225 kb on - strandat 609.225 kb on - strandat 609.228 kb on - strandat 609.289 kb on + strand, within QEN71_RS02715at 609.289 kb on + strand, within QEN71_RS02715at 609.289 kb on + strand, within QEN71_RS02715at 609.291 kb on + strand, within QEN71_RS02715at 609.291 kb on + strand, within QEN71_RS02715at 609.291 kb on + strand, within QEN71_RS02715at 609.291 kb on + strand, within QEN71_RS02715at 609.291 kb on + strand, within QEN71_RS02715at 609.292 kb on - strand, within QEN71_RS02715at 609.440 kb on + strand, within QEN71_RS02715at 609.440 kb on + strand, within QEN71_RS02715at 609.441 kb on - strand, within QEN71_RS02715at 609.441 kb on - strand, within QEN71_RS02715at 609.441 kb on - strand, within QEN71_RS02715at 609.441 kb on - strand, within QEN71_RS02715at 609.441 kb on - strand, within QEN71_RS02715at 609.441 kb on - strand, within QEN71_RS02715at 609.474 kb on + strand, within QEN71_RS02715at 609.474 kb on + strand, within QEN71_RS02715at 609.474 kb on + strand, within QEN71_RS02715at 609.474 kb on + strand, within QEN71_RS02715at 609.474 kb on + strand, within QEN71_RS02715at 609.475 kb on - strand, within QEN71_RS02715at 609.475 kb on - strand, within QEN71_RS02715at 609.475 kb on - strand, within QEN71_RS02715at 609.475 kb on - strand, within QEN71_RS02715at 609.632 kb on + strand, within QEN71_RS02715at 609.632 kb on + strand, within QEN71_RS02715at 609.632 kb on + strand, within QEN71_RS02715at 609.723 kb on - strand, within QEN71_RS02715at 609.846 kb on + strand, within QEN71_RS02715at 609.846 kb on + strand, within QEN71_RS02715at 609.846 kb on + strand, within QEN71_RS02715at 609.867 kb on + strand, within QEN71_RS02715

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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607,441 + QEN71_RS02705 0.37 -1.2
607,441 + QEN71_RS02705 0.37 -0.3
607,441 + QEN71_RS02705 0.37 -0.6
607,442 - QEN71_RS02705 0.37 -1.5
607,523 - QEN71_RS02705 0.44 -0.3
607,780 + QEN71_RS02705 0.65 +0.4
607,781 - QEN71_RS02705 0.65 +0.3
607,792 + QEN71_RS02705 0.66 -0.5
607,792 + QEN71_RS02705 0.66 -1.2
607,792 + QEN71_RS02705 0.66 -1.0
607,793 - QEN71_RS02705 0.66 +0.1
607,793 - QEN71_RS02705 0.66 +0.4
607,793 - QEN71_RS02705 0.66 -0.0
607,793 - QEN71_RS02705 0.66 +0.8
607,793 - QEN71_RS02705 0.66 +0.3
607,822 + QEN71_RS02705 0.68 -1.2
607,822 + QEN71_RS02705 0.68 -1.3
607,823 - QEN71_RS02705 0.69 +1.1
607,823 - QEN71_RS02705 0.69 -0.2
607,823 - QEN71_RS02705 0.69 -2.4
607,823 - QEN71_RS02705 0.69 -1.8
607,843 + QEN71_RS02705 0.70 -0.2
607,843 + QEN71_RS02705 0.70 -2.3
607,844 - QEN71_RS02705 0.70 -0.4
607,844 - QEN71_RS02705 0.70 +0.4
607,844 - QEN71_RS02705 0.70 -0.2
607,844 - QEN71_RS02705 0.70 +1.0
607,844 - QEN71_RS02705 0.70 -0.0
607,844 - QEN71_RS02705 0.70 +0.4
607,850 - QEN71_RS02705 0.71 -0.8
607,891 + QEN71_RS02705 0.74 -1.1
607,948 + QEN71_RS02705 0.79 -0.2
607,948 + QEN71_RS02705 0.79 +0.0
607,949 - QEN71_RS02705 0.79 +0.8
607,955 + QEN71_RS02705 0.79 -0.3
608,005 + QEN71_RS02705 0.84 -2.7
608,006 - QEN71_RS02705 0.84 +0.3
608,147 + -0.0
608,148 - +0.3
608,163 + -0.9
608,164 - +0.1
608,164 - -0.6
608,173 - -2.0
608,173 - -2.8
608,173 - -0.4
609,020 - -0.0
609,020 - -0.4
609,020 - +1.9
609,026 - +0.9
609,026 - +2.4
609,026 - -0.7
609,037 - -0.2
609,037 - +0.3
609,037 - -0.1
609,052 + -1.2
609,052 + -0.2
609,053 - +1.1
609,053 - -0.9
609,053 - +0.8
609,158 - +0.3
609,158 - -0.5
609,181 + -0.9
609,181 + +0.1
609,181 + +0.2
609,181 + -2.4
609,181 + -1.3
609,181 + +0.0
609,181 + -1.8
609,182 - -0.4
609,182 - +3.0
609,182 - +0.4
609,182 - +1.1
609,182 - +0.7
609,182 - +0.6
609,182 - +0.8
609,182 - -0.2
609,182 - -0.4
609,182 - -0.7
609,182 - +1.4
609,182 - +1.0
609,182 - -0.4
609,224 + -0.6
609,224 + -0.5
609,224 + +0.1
609,224 + -0.6
609,225 - -1.6
609,225 - +0.6
609,225 - +0.8
609,225 - -0.4
609,225 - -0.5
609,225 - +0.4
609,228 - +1.2
609,289 + QEN71_RS02715 0.12 +0.9
609,289 + QEN71_RS02715 0.12 +0.7
609,289 + QEN71_RS02715 0.12 +0.6
609,291 + QEN71_RS02715 0.12 -1.1
609,291 + QEN71_RS02715 0.12 +1.4
609,291 + QEN71_RS02715 0.12 -0.1
609,291 + QEN71_RS02715 0.12 -0.8
609,291 + QEN71_RS02715 0.12 -0.8
609,292 - QEN71_RS02715 0.12 -0.3
609,440 + QEN71_RS02715 0.29 -0.0
609,440 + QEN71_RS02715 0.29 +0.4
609,441 - QEN71_RS02715 0.29 +0.1
609,441 - QEN71_RS02715 0.29 +1.0
609,441 - QEN71_RS02715 0.29 -0.1
609,441 - QEN71_RS02715 0.29 -0.2
609,441 - QEN71_RS02715 0.29 -0.9
609,441 - QEN71_RS02715 0.29 +0.3
609,474 + QEN71_RS02715 0.33 +0.8
609,474 + QEN71_RS02715 0.33 +0.1
609,474 + QEN71_RS02715 0.33 +0.1
609,474 + QEN71_RS02715 0.33 +3.0
609,474 + QEN71_RS02715 0.33 +0.3
609,475 - QEN71_RS02715 0.33 +1.3
609,475 - QEN71_RS02715 0.33 -1.7
609,475 - QEN71_RS02715 0.33 -0.0
609,475 - QEN71_RS02715 0.33 +1.6
609,632 + QEN71_RS02715 0.51 -0.5
609,632 + QEN71_RS02715 0.51 -0.4
609,632 + QEN71_RS02715 0.51 -0.1
609,723 - QEN71_RS02715 0.62 +0.1
609,846 + QEN71_RS02715 0.76 -2.3
609,846 + QEN71_RS02715 0.76 +1.0
609,846 + QEN71_RS02715 0.76 -1.6
609,867 + QEN71_RS02715 0.79 +1.1

Or see this region's nucleotide sequence