Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02625

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS02620 and QEN71_RS02625 are separated by 122 nucleotidesQEN71_RS02625 and QEN71_RS02630 are separated by 171 nucleotides QEN71_RS02620: QEN71_RS02620 - sugar-binding transcriptional regulator, at 587,281 to 588,252 _RS02620 QEN71_RS02625: QEN71_RS02625 - xylulokinase, at 588,375 to 589,859 _RS02625 QEN71_RS02630: QEN71_RS02630 - mannitol dehydrogenase family protein, at 590,031 to 591,437 _RS02630 Position (kb) 588 589 590Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 587.611 kb on - strand, within QEN71_RS02620at 587.784 kb on - strand, within QEN71_RS02620at 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.198 kb on - strandat 588.198 kb on - strandat 588.200 kb on + strandat 588.201 kb on - strandat 588.201 kb on - strandat 588.201 kb on - strandat 588.376 kb on + strandat 588.427 kb on + strandat 588.439 kb on + strandat 588.439 kb on + strandat 588.439 kb on + strandat 588.440 kb on - strandat 588.646 kb on + strand, within QEN71_RS02625at 588.646 kb on + strand, within QEN71_RS02625at 588.646 kb on + strand, within QEN71_RS02625at 588.647 kb on - strand, within QEN71_RS02625at 588.647 kb on - strand, within QEN71_RS02625at 588.687 kb on + strand, within QEN71_RS02625at 588.688 kb on - strand, within QEN71_RS02625at 588.760 kb on + strand, within QEN71_RS02625at 588.817 kb on + strand, within QEN71_RS02625at 588.853 kb on + strand, within QEN71_RS02625at 588.853 kb on + strand, within QEN71_RS02625at 588.853 kb on + strand, within QEN71_RS02625at 588.853 kb on + strand, within QEN71_RS02625at 588.854 kb on - strand, within QEN71_RS02625at 588.854 kb on - strand, within QEN71_RS02625at 589.390 kb on + strand, within QEN71_RS02625at 589.390 kb on + strand, within QEN71_RS02625at 589.391 kb on - strand, within QEN71_RS02625at 589.528 kb on + strand, within QEN71_RS02625at 589.528 kb on + strand, within QEN71_RS02625at 589.528 kb on + strand, within QEN71_RS02625at 589.855 kb on + strandat 589.855 kb on + strandat 589.855 kb on + strandat 589.855 kb on + strandat 589.855 kb on + strandat 589.855 kb on + strandat 589.855 kb on + strandat 589.855 kb on + strandat 589.855 kb on + strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.856 kb on - strandat 589.892 kb on + strandat 589.892 kb on + strandat 589.893 kb on - strandat 589.897 kb on + strandat 589.897 kb on + strandat 590.014 kb on - strandat 590.032 kb on + strandat 590.032 kb on + strandat 590.033 kb on - strandat 590.033 kb on - strandat 590.213 kb on - strand, within QEN71_RS02630at 590.213 kb on - strand, within QEN71_RS02630at 590.213 kb on - strand, within QEN71_RS02630at 590.213 kb on - strand, within QEN71_RS02630at 590.213 kb on - strand, within QEN71_RS02630at 590.213 kb on - strand, within QEN71_RS02630at 590.213 kb on - strand, within QEN71_RS02630at 590.218 kb on + strand, within QEN71_RS02630at 590.218 kb on + strand, within QEN71_RS02630at 590.219 kb on - strand, within QEN71_RS02630at 590.390 kb on + strand, within QEN71_RS02630at 590.390 kb on + strand, within QEN71_RS02630at 590.391 kb on - strand, within QEN71_RS02630at 590.391 kb on - strand, within QEN71_RS02630at 590.391 kb on - strand, within QEN71_RS02630at 590.392 kb on + strand, within QEN71_RS02630at 590.392 kb on + strand, within QEN71_RS02630at 590.392 kb on + strand, within QEN71_RS02630at 590.392 kb on + strand, within QEN71_RS02630at 590.392 kb on + strand, within QEN71_RS02630at 590.392 kb on + strand, within QEN71_RS02630at 590.392 kb on + strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.393 kb on - strand, within QEN71_RS02630at 590.428 kb on + strand, within QEN71_RS02630at 590.429 kb on - strand, within QEN71_RS02630at 590.429 kb on - strand, within QEN71_RS02630at 590.485 kb on + strand, within QEN71_RS02630at 590.485 kb on + strand, within QEN71_RS02630at 590.485 kb on + strand, within QEN71_RS02630at 590.485 kb on + strand, within QEN71_RS02630at 590.485 kb on + strand, within QEN71_RS02630at 590.486 kb on - strand, within QEN71_RS02630at 590.486 kb on - strand, within QEN71_RS02630at 590.486 kb on - strand, within QEN71_RS02630at 590.486 kb on - strand, within QEN71_RS02630at 590.486 kb on - strand, within QEN71_RS02630at 590.486 kb on - strand, within QEN71_RS02630at 590.536 kb on + strand, within QEN71_RS02630at 590.536 kb on + strand, within QEN71_RS02630at 590.536 kb on + strand, within QEN71_RS02630at 590.536 kb on + strand, within QEN71_RS02630at 590.536 kb on + strand, within QEN71_RS02630at 590.536 kb on + strand, within QEN71_RS02630at 590.536 kb on + strand, within QEN71_RS02630at 590.537 kb on - strand, within QEN71_RS02630at 590.537 kb on - strand, within QEN71_RS02630at 590.537 kb on - strand, within QEN71_RS02630at 590.537 kb on - strand, within QEN71_RS02630at 590.537 kb on - strand, within QEN71_RS02630at 590.576 kb on + strand, within QEN71_RS02630at 590.576 kb on + strand, within QEN71_RS02630at 590.576 kb on + strand, within QEN71_RS02630at 590.576 kb on + strand, within QEN71_RS02630at 590.576 kb on + strand, within QEN71_RS02630at 590.576 kb on + strand, within QEN71_RS02630at 590.576 kb on + strand, within QEN71_RS02630at 590.577 kb on - strand, within QEN71_RS02630at 590.577 kb on - strand, within QEN71_RS02630at 590.703 kb on - strand, within QEN71_RS02630at 590.789 kb on + strand, within QEN71_RS02630at 590.789 kb on + strand, within QEN71_RS02630at 590.790 kb on - strand, within QEN71_RS02630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
remove
587,611 - QEN71_RS02620 0.34 -0.9
587,784 - QEN71_RS02620 0.52 -2.7
588,197 + -0.7
588,197 + -1.2
588,197 + -2.5
588,197 + -1.2
588,197 + -0.5
588,197 + -3.6
588,198 - -2.7
588,198 - -3.7
588,200 + -1.5
588,201 - -3.1
588,201 - -0.4
588,201 - -2.9
588,376 + +1.4
588,427 + -0.5
588,439 + +1.1
588,439 + +0.6
588,439 + -1.9
588,440 - -1.4
588,646 + QEN71_RS02625 0.18 +1.6
588,646 + QEN71_RS02625 0.18 -1.0
588,646 + QEN71_RS02625 0.18 -0.9
588,647 - QEN71_RS02625 0.18 -2.2
588,647 - QEN71_RS02625 0.18 -1.9
588,687 + QEN71_RS02625 0.21 -0.2
588,688 - QEN71_RS02625 0.21 +1.3
588,760 + QEN71_RS02625 0.26 -0.6
588,817 + QEN71_RS02625 0.30 +2.4
588,853 + QEN71_RS02625 0.32 +1.2
588,853 + QEN71_RS02625 0.32 +0.7
588,853 + QEN71_RS02625 0.32 +0.5
588,853 + QEN71_RS02625 0.32 -0.7
588,854 - QEN71_RS02625 0.32 -0.9
588,854 - QEN71_RS02625 0.32 +0.2
589,390 + QEN71_RS02625 0.68 -0.5
589,390 + QEN71_RS02625 0.68 -0.9
589,391 - QEN71_RS02625 0.68 +0.2
589,528 + QEN71_RS02625 0.78 -0.7
589,528 + QEN71_RS02625 0.78 -1.7
589,528 + QEN71_RS02625 0.78 -1.2
589,855 + -1.0
589,855 + -3.5
589,855 + -2.5
589,855 + -0.8
589,855 + -1.6
589,855 + +1.4
589,855 + -3.5
589,855 + -1.2
589,855 + -2.1
589,856 - +1.0
589,856 - +0.5
589,856 - +0.8
589,856 - +0.2
589,856 - -0.6
589,856 - -0.3
589,856 - -0.0
589,856 - -0.1
589,856 - -1.1
589,856 - -0.8
589,892 + -0.2
589,892 + -0.2
589,893 - -1.4
589,897 + +0.1
589,897 + -0.4
590,014 - +1.5
590,032 + -0.0
590,032 + -1.3
590,033 - -2.7
590,033 - -0.0
590,213 - QEN71_RS02630 0.13 -3.1
590,213 - QEN71_RS02630 0.13 -0.4
590,213 - QEN71_RS02630 0.13 -0.2
590,213 - QEN71_RS02630 0.13 -2.4
590,213 - QEN71_RS02630 0.13 -1.5
590,213 - QEN71_RS02630 0.13 -4.2
590,213 - QEN71_RS02630 0.13 -2.2
590,218 + QEN71_RS02630 0.13 -0.4
590,218 + QEN71_RS02630 0.13 -3.6
590,219 - QEN71_RS02630 0.13 -3.2
590,390 + QEN71_RS02630 0.26 -0.2
590,390 + QEN71_RS02630 0.26 +0.7
590,391 - QEN71_RS02630 0.26 -1.5
590,391 - QEN71_RS02630 0.26 +0.4
590,391 - QEN71_RS02630 0.26 -1.1
590,392 + QEN71_RS02630 0.26 -3.2
590,392 + QEN71_RS02630 0.26 -1.6
590,392 + QEN71_RS02630 0.26 +0.4
590,392 + QEN71_RS02630 0.26 -2.1
590,392 + QEN71_RS02630 0.26 -3.3
590,392 + QEN71_RS02630 0.26 -3.5
590,392 + QEN71_RS02630 0.26 -0.9
590,393 - QEN71_RS02630 0.26 +0.1
590,393 - QEN71_RS02630 0.26 -0.8
590,393 - QEN71_RS02630 0.26 -2.9
590,393 - QEN71_RS02630 0.26 -1.3
590,393 - QEN71_RS02630 0.26 -3.4
590,393 - QEN71_RS02630 0.26 -3.1
590,393 - QEN71_RS02630 0.26 -4.5
590,393 - QEN71_RS02630 0.26 -1.8
590,393 - QEN71_RS02630 0.26 -1.7
590,393 - QEN71_RS02630 0.26 -2.9
590,393 - QEN71_RS02630 0.26 -0.4
590,428 + QEN71_RS02630 0.28 -2.9
590,429 - QEN71_RS02630 0.28 -1.2
590,429 - QEN71_RS02630 0.28 -1.9
590,485 + QEN71_RS02630 0.32 -1.6
590,485 + QEN71_RS02630 0.32 -2.2
590,485 + QEN71_RS02630 0.32 -2.7
590,485 + QEN71_RS02630 0.32 -1.3
590,485 + QEN71_RS02630 0.32 +0.4
590,486 - QEN71_RS02630 0.32 -2.0
590,486 - QEN71_RS02630 0.32 -1.7
590,486 - QEN71_RS02630 0.32 -3.7
590,486 - QEN71_RS02630 0.32 -1.8
590,486 - QEN71_RS02630 0.32 -2.3
590,486 - QEN71_RS02630 0.32 -2.4
590,536 + QEN71_RS02630 0.36 -3.4
590,536 + QEN71_RS02630 0.36 -1.8
590,536 + QEN71_RS02630 0.36 -0.6
590,536 + QEN71_RS02630 0.36 -0.6
590,536 + QEN71_RS02630 0.36 -2.1
590,536 + QEN71_RS02630 0.36 -4.4
590,536 + QEN71_RS02630 0.36 -1.5
590,537 - QEN71_RS02630 0.36 -2.7
590,537 - QEN71_RS02630 0.36 -0.7
590,537 - QEN71_RS02630 0.36 -4.3
590,537 - QEN71_RS02630 0.36 -3.4
590,537 - QEN71_RS02630 0.36 -0.6
590,576 + QEN71_RS02630 0.39 -2.2
590,576 + QEN71_RS02630 0.39 -3.1
590,576 + QEN71_RS02630 0.39 -0.6
590,576 + QEN71_RS02630 0.39 -2.5
590,576 + QEN71_RS02630 0.39 -1.2
590,576 + QEN71_RS02630 0.39 -3.7
590,576 + QEN71_RS02630 0.39 +0.4
590,577 - QEN71_RS02630 0.39 -0.6
590,577 - QEN71_RS02630 0.39 -2.5
590,703 - QEN71_RS02630 0.48 -3.6
590,789 + QEN71_RS02630 0.54 -0.9
590,789 + QEN71_RS02630 0.54 -0.9
590,790 - QEN71_RS02630 0.54 -1.9

Or see this region's nucleotide sequence