Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01275

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01265 and QEN71_RS01270 overlap by 4 nucleotidesQEN71_RS01270 and QEN71_RS01275 are separated by 18 nucleotidesQEN71_RS01275 and QEN71_RS01280 are separated by 18 nucleotidesQEN71_RS01280 and QEN71_RS01285 are separated by 30 nucleotides QEN71_RS01265: QEN71_RS01265 - ABC transporter permease, at 286,434 to 287,573 _RS01265 QEN71_RS01270: QEN71_RS01270 - ATP-binding cassette domain-containing protein, at 287,570 to 288,460 _RS01270 QEN71_RS01275: QEN71_RS01275 - MlaD family protein, at 288,479 to 289,441 _RS01275 QEN71_RS01280: QEN71_RS01280 - ABC-type transport auxiliary lipoprotein family protein, at 289,460 to 290,086 _RS01280 QEN71_RS01285: QEN71_RS01285 - VanZ family protein, at 290,117 to 291,277 _RS01285 Position (kb) 288 289 290Strain fitness (log2 ratio) -2 -1 0 1 2at 287.596 kb on - strandat 287.924 kb on - strand, within QEN71_RS01270at 287.924 kb on - strand, within QEN71_RS01270at 287.924 kb on - strand, within QEN71_RS01270at 287.924 kb on - strand, within QEN71_RS01270at 288.338 kb on + strand, within QEN71_RS01270at 288.338 kb on + strand, within QEN71_RS01270at 288.339 kb on - strand, within QEN71_RS01270at 288.339 kb on - strand, within QEN71_RS01270at 288.339 kb on - strand, within QEN71_RS01270at 288.487 kb on + strandat 288.487 kb on + strandat 288.487 kb on + strandat 288.488 kb on - strandat 288.488 kb on - strandat 288.585 kb on + strand, within QEN71_RS01275at 288.585 kb on + strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.586 kb on - strand, within QEN71_RS01275at 288.642 kb on + strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.643 kb on - strand, within QEN71_RS01275at 288.647 kb on + strand, within QEN71_RS01275at 288.829 kb on + strand, within QEN71_RS01275at 288.829 kb on + strand, within QEN71_RS01275at 288.829 kb on + strand, within QEN71_RS01275at 288.830 kb on - strand, within QEN71_RS01275at 288.830 kb on - strand, within QEN71_RS01275at 288.830 kb on - strand, within QEN71_RS01275at 289.259 kb on + strand, within QEN71_RS01275at 289.260 kb on - strand, within QEN71_RS01275at 289.445 kb on + strandat 289.445 kb on + strandat 289.445 kb on + strandat 289.445 kb on + strandat 289.446 kb on - strandat 289.453 kb on + strandat 289.453 kb on + strandat 289.453 kb on + strandat 289.453 kb on + strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.454 kb on - strandat 289.577 kb on + strand, within QEN71_RS01280at 289.695 kb on - strand, within QEN71_RS01280at 290.177 kb on + strandat 290.177 kb on + strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.178 kb on - strandat 290.195 kb on + strandat 290.196 kb on - strandat 290.196 kb on - strandat 290.196 kb on - strandat 290.196 kb on - strandat 290.207 kb on + strandat 290.216 kb on + strandat 290.216 kb on + strandat 290.217 kb on - strandat 290.217 kb on - strandat 290.217 kb on - strandat 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.252 kb on + strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.253 kb on - strand, within QEN71_RS01285at 290.276 kb on + strand, within QEN71_RS01285at 290.276 kb on + strand, within QEN71_RS01285at 290.276 kb on + strand, within QEN71_RS01285at 290.277 kb on - strand, within QEN71_RS01285at 290.277 kb on - strand, within QEN71_RS01285at 290.277 kb on - strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.315 kb on + strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.316 kb on - strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.438 kb on + strand, within QEN71_RS01285at 290.439 kb on - strand, within QEN71_RS01285

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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287,596 - -1.8
287,924 - QEN71_RS01270 0.40 +0.2
287,924 - QEN71_RS01270 0.40 -0.2
287,924 - QEN71_RS01270 0.40 -0.3
287,924 - QEN71_RS01270 0.40 -0.4
288,338 + QEN71_RS01270 0.86 -0.6
288,338 + QEN71_RS01270 0.86 -1.5
288,339 - QEN71_RS01270 0.86 +0.5
288,339 - QEN71_RS01270 0.86 +0.2
288,339 - QEN71_RS01270 0.86 -0.8
288,487 + +0.2
288,487 + +0.0
288,487 + -0.9
288,488 - +0.0
288,488 - +0.5
288,585 + QEN71_RS01275 0.11 +2.5
288,585 + QEN71_RS01275 0.11 +1.1
288,586 - QEN71_RS01275 0.11 -1.8
288,586 - QEN71_RS01275 0.11 +0.7
288,586 - QEN71_RS01275 0.11 -2.1
288,586 - QEN71_RS01275 0.11 +1.8
288,586 - QEN71_RS01275 0.11 -0.4
288,642 + QEN71_RS01275 0.17 -1.4
288,643 - QEN71_RS01275 0.17 -0.1
288,643 - QEN71_RS01275 0.17 +0.2
288,643 - QEN71_RS01275 0.17 -2.1
288,643 - QEN71_RS01275 0.17 +0.3
288,647 + QEN71_RS01275 0.17 +0.2
288,829 + QEN71_RS01275 0.36 +0.7
288,829 + QEN71_RS01275 0.36 -0.0
288,829 + QEN71_RS01275 0.36 +0.7
288,830 - QEN71_RS01275 0.36 +0.1
288,830 - QEN71_RS01275 0.36 +0.9
288,830 - QEN71_RS01275 0.36 -0.3
289,259 + QEN71_RS01275 0.81 +0.3
289,260 - QEN71_RS01275 0.81 +1.2
289,445 + +1.3
289,445 + +0.9
289,445 + +1.7
289,445 + +0.9
289,446 - -0.6
289,453 + -1.1
289,453 + -1.6
289,453 + +2.3
289,453 + +0.1
289,454 - -1.3
289,454 - -0.3
289,454 - -0.1
289,454 - -0.2
289,454 - +0.3
289,454 - +0.0
289,454 - +2.3
289,454 - -0.7
289,577 + QEN71_RS01280 0.19 -0.1
289,695 - QEN71_RS01280 0.37 -1.1
290,177 + +0.5
290,177 + +1.0
290,178 - +1.2
290,178 - -0.3
290,178 - +0.1
290,178 - +0.0
290,178 - -0.3
290,178 - -0.8
290,178 - +2.7
290,195 + +0.0
290,196 - -1.4
290,196 - -0.9
290,196 - +0.2
290,196 - +0.1
290,207 + -1.3
290,216 + +0.2
290,216 + -1.7
290,217 - -1.0
290,217 - -0.5
290,217 - +1.0
290,252 + QEN71_RS01285 0.12 -0.4
290,252 + QEN71_RS01285 0.12 +0.8
290,252 + QEN71_RS01285 0.12 +0.2
290,252 + QEN71_RS01285 0.12 +0.5
290,252 + QEN71_RS01285 0.12 -0.3
290,252 + QEN71_RS01285 0.12 +0.3
290,253 - QEN71_RS01285 0.12 +1.6
290,253 - QEN71_RS01285 0.12 -1.6
290,253 - QEN71_RS01285 0.12 +0.5
290,253 - QEN71_RS01285 0.12 -0.5
290,253 - QEN71_RS01285 0.12 -0.5
290,253 - QEN71_RS01285 0.12 -1.4
290,276 + QEN71_RS01285 0.14 -0.7
290,276 + QEN71_RS01285 0.14 -1.8
290,276 + QEN71_RS01285 0.14 +0.9
290,277 - QEN71_RS01285 0.14 +0.5
290,277 - QEN71_RS01285 0.14 +0.5
290,277 - QEN71_RS01285 0.14 -0.6
290,315 + QEN71_RS01285 0.17 -2.1
290,315 + QEN71_RS01285 0.17 -0.1
290,315 + QEN71_RS01285 0.17 +1.3
290,315 + QEN71_RS01285 0.17 -0.6
290,315 + QEN71_RS01285 0.17 -1.1
290,316 - QEN71_RS01285 0.17 -0.1
290,316 - QEN71_RS01285 0.17 -0.0
290,316 - QEN71_RS01285 0.17 -0.2
290,316 - QEN71_RS01285 0.17 -0.1
290,316 - QEN71_RS01285 0.17 -0.1
290,438 + QEN71_RS01285 0.28 -0.3
290,438 + QEN71_RS01285 0.28 -0.2
290,438 + QEN71_RS01285 0.28 +0.4
290,438 + QEN71_RS01285 0.28 -0.8
290,439 - QEN71_RS01285 0.28 +1.0

Or see this region's nucleotide sequence