Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04109

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
4,610,665	+		MIT1002_04107	0.59	+0.9
4,610,714	+		MIT1002_04107	0.64	-3.0
4,610,864	+		MIT1002_04107	0.76	+1.7
4,610,921	-		MIT1002_04107	0.81	-0.0
4,610,962	-		MIT1002_04107	0.84	+1.2
4,610,978	+		MIT1002_04107	0.86	-0.3
4,611,063	-				+3.0
4,611,063	-				-0.6
4,611,216	+				-0.5
4,611,235	+				-0.4
4,611,245	-				+0.2
4,611,298	+		MIT1002_04108	0.24	+0.4
4,611,340	+		MIT1002_04108	0.36	+0.6
4,611,404	-		MIT1002_04108	0.55	-1.9
4,611,418	+		MIT1002_04108	0.59	-0.7
4,611,551	-				-0.0
4,611,557	+				-0.7
4,611,565	-				+0.7
4,611,582	-				-0.7
4,611,654	-				+0.4
4,611,656	+				+0.5
4,611,656	+				+0.3
4,611,664	-				+0.6
4,611,666	-				-0.1
4,611,692	+				+0.9
4,611,692	+				-1.3
4,611,692	+				+2.1
4,611,692	+				-0.7
4,611,698	-		MIT1002_04109	0.11	+1.0
4,611,698	-		MIT1002_04109	0.11	+2.0
4,611,700	-		MIT1002_04109	0.11	+0.9
4,611,700	-		MIT1002_04109	0.11	-1.3
4,611,700	-		MIT1002_04109	0.11	-1.2
4,611,700	-		MIT1002_04109	0.11	+2.8
4,611,700	-		MIT1002_04109	0.11	+0.6
4,611,711	+		MIT1002_04109	0.13	+1.9
4,611,811	-		MIT1002_04109	0.30	-1.0
4,611,839	-		MIT1002_04109	0.35	+0.8
4,611,885	+		MIT1002_04109	0.43	-1.5
4,611,890	+		MIT1002_04109	0.44	-0.3
4,611,892	+		MIT1002_04109	0.44	-1.3
4,611,893	-		MIT1002_04109	0.44	+1.4
4,611,898	-		MIT1002_04109	0.45	-1.5
4,611,927	-		MIT1002_04109	0.50	-2.3
4,611,993	-		MIT1002_04109	0.61	+0.2
4,612,088	+		MIT1002_04109	0.78	+0.3
4,612,088	+		MIT1002_04109	0.78	+0.2
4,612,096	-		MIT1002_04109	0.79	-0.2
4,612,113	+		MIT1002_04109	0.82	+1.5
4,612,113	+		MIT1002_04109	0.82	-0.6
4,612,124	-		MIT1002_04109	0.84	-0.9
4,612,148	+		MIT1002_04109	0.88	-0.7
4,612,189	+				-1.0
4,612,197	-				+0.8
4,612,217	+				-1.4
4,612,265	+				-1.9
4,612,273	-				-1.3
4,612,331	+		MIT1002_04110	0.15	-0.5
4,612,331	+		MIT1002_04110	0.15	-0.7
4,612,421	+		MIT1002_04110	0.30	-0.6
4,612,442	+		MIT1002_04110	0.34	-2.1
4,612,442	+		MIT1002_04110	0.34	+1.0
4,612,479	-		MIT1002_04110	0.40	+1.4
4,612,479	-		MIT1002_04110	0.40	+0.1
4,612,481	+		MIT1002_04110	0.40	+0.5
4,612,586	+		MIT1002_04110	0.57	+1.6
4,612,601	+		MIT1002_04110	0.60	+1.3
4,612,601	+		MIT1002_04110	0.60	+1.5
4,612,609	-		MIT1002_04110	0.61	+0.0
4,612,609	-		MIT1002_04110	0.61	+1.6
4,612,626	-		MIT1002_04110	0.64	-0.2
4,612,636	-		MIT1002_04110	0.66	-2.2
4,612,662	-		MIT1002_04110	0.70	-1.2
4,612,671	+		MIT1002_04110	0.72	+2.1
4,612,759	+		MIT1002_04110	0.86	+1.3
4,612,909	+				-0.9
4,612,917	-				+0.1
4,612,926	+				+0.0
4,612,927	+				-1.0
4,612,927	+				-0.2
4,612,941	-				+0.3
4,612,952	+				-2.2
4,612,962	-				-0.5
4,613,000	-				-0.7
4,613,000	-				+1.4
4,613,088	+				+0.2
4,613,089	+				-0.3
4,613,089	+				+0.4
4,613,094	+				-2.6
4,613,097	-				-1.7
4,613,179	+		MIT1002_04111	0.18	+2.0
4,613,184	-		MIT1002_04111	0.19	-1.5
4,613,184	-		MIT1002_04111	0.19	-2.2
4,613,187	-		MIT1002_04111	0.19	+0.4
4,613,207	+		MIT1002_04111	0.21	-0.4
4,613,215	-		MIT1002_04111	0.22	-1.6