Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04093 and MIT1002_04094 are separated by 57 nucleotides MIT1002_04094 and MIT1002_04095 are separated by 433 nucleotides MIT1002_04095 and MIT1002_04096 are separated by 297 nucleotides MIT1002_04096 and MIT1002_04097 overlap by 8 nucleotides
MIT1002_04093: MIT1002_04093 - Type I restriction modification DNA specificity domain protein, at 4,592,346 to 4,592,945
_04093
MIT1002_04094: MIT1002_04094 - hypothetical protein, at 4,593,003 to 4,593,293
_04094
MIT1002_04095: MIT1002_04095 - hypothetical protein, at 4,593,727 to 4,593,960
_04095
MIT1002_04096: MIT1002_04096 - transcriptional regulator, y4mF family, at 4,594,258 to 4,594,536
_04096
MIT1002_04097: MIT1002_04097 - putative DNA-binding transcriptional regulator, at 4,594,529 to 4,595,866
_04097
Position (kb) 4593
4594 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4592.862 kb on - strand, within MIT1002_04093 at 4592.901 kb on + strand at 4592.909 kb on - strand at 4592.909 kb on - strand at 4593.018 kb on - strand at 4593.029 kb on - strand at 4593.095 kb on - strand, within MIT1002_04094 at 4593.111 kb on + strand, within MIT1002_04094 at 4593.118 kb on + strand, within MIT1002_04094 at 4593.135 kb on + strand, within MIT1002_04094 at 4593.199 kb on - strand, within MIT1002_04094 at 4593.200 kb on - strand, within MIT1002_04094 at 4593.354 kb on + strand at 4593.371 kb on - strand at 4593.431 kb on + strand at 4593.431 kb on + strand at 4593.439 kb on - strand at 4593.447 kb on + strand at 4593.528 kb on + strand at 4593.536 kb on - strand at 4593.537 kb on - strand at 4593.612 kb on - strand at 4593.630 kb on + strand at 4593.796 kb on - strand, within MIT1002_04095 at 4593.814 kb on + strand, within MIT1002_04095 at 4593.835 kb on + strand, within MIT1002_04095 at 4593.835 kb on + strand, within MIT1002_04095 at 4593.849 kb on + strand, within MIT1002_04095 at 4593.849 kb on + strand, within MIT1002_04095 at 4594.044 kb on + strand at 4594.049 kb on + strand at 4594.049 kb on + strand at 4594.059 kb on + strand at 4594.112 kb on - strand at 4594.171 kb on + strand at 4594.179 kb on - strand at 4594.299 kb on - strand, within MIT1002_04096 at 4594.318 kb on + strand, within MIT1002_04096 at 4594.346 kb on - strand, within MIT1002_04096 at 4594.349 kb on - strand, within MIT1002_04096 at 4594.404 kb on + strand, within MIT1002_04096 at 4594.406 kb on + strand, within MIT1002_04096 at 4594.412 kb on - strand, within MIT1002_04096 at 4594.414 kb on - strand, within MIT1002_04096 at 4594.520 kb on + strand at 4594.563 kb on + strand at 4594.631 kb on - strand at 4594.632 kb on + strand at 4594.714 kb on + strand, within MIT1002_04097 at 4594.714 kb on + strand, within MIT1002_04097 at 4594.750 kb on - strand, within MIT1002_04097 at 4594.781 kb on + strand, within MIT1002_04097 at 4594.789 kb on - strand, within MIT1002_04097 at 4594.860 kb on + strand, within MIT1002_04097 at 4594.923 kb on + strand, within MIT1002_04097 at 4594.959 kb on + strand, within MIT1002_04097
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 4,592,862 - MIT1002_04093 0.86 -2.2 4,592,901 + -0.6 4,592,909 - -0.7 4,592,909 - -0.2 4,593,018 - -0.8 4,593,029 - -0.8 4,593,095 - MIT1002_04094 0.32 -1.0 4,593,111 + MIT1002_04094 0.37 -1.3 4,593,118 + MIT1002_04094 0.40 +1.3 4,593,135 + MIT1002_04094 0.45 -1.0 4,593,199 - MIT1002_04094 0.67 +0.1 4,593,200 - MIT1002_04094 0.68 +0.9 4,593,354 + +0.9 4,593,371 - -1.1 4,593,431 + -0.4 4,593,431 + -0.5 4,593,439 - +0.4 4,593,447 + -0.2 4,593,528 + +0.2 4,593,536 - -0.2 4,593,537 - +0.5 4,593,612 - -0.0 4,593,630 + +0.5 4,593,796 - MIT1002_04095 0.29 -0.7 4,593,814 + MIT1002_04095 0.37 -2.2 4,593,835 + MIT1002_04095 0.46 +0.9 4,593,835 + MIT1002_04095 0.46 +2.8 4,593,849 + MIT1002_04095 0.52 -0.2 4,593,849 + MIT1002_04095 0.52 +0.8 4,594,044 + +1.2 4,594,049 + -0.5 4,594,049 + +1.3 4,594,059 + +0.2 4,594,112 - +1.1 4,594,171 + -1.7 4,594,179 - -0.5 4,594,299 - MIT1002_04096 0.15 -0.7 4,594,318 + MIT1002_04096 0.22 +0.7 4,594,346 - MIT1002_04096 0.32 -1.2 4,594,349 - MIT1002_04096 0.33 -1.7 4,594,404 + MIT1002_04096 0.52 -0.7 4,594,406 + MIT1002_04096 0.53 +0.1 4,594,412 - MIT1002_04096 0.55 -0.9 4,594,414 - MIT1002_04096 0.56 -0.8 4,594,520 + +0.3 4,594,563 + +0.3 4,594,631 - -1.0 4,594,632 + -0.2 4,594,714 + MIT1002_04097 0.14 -0.2 4,594,714 + MIT1002_04097 0.14 -0.4 4,594,750 - MIT1002_04097 0.17 -0.5 4,594,781 + MIT1002_04097 0.19 -0.4 4,594,789 - MIT1002_04097 0.19 -0.8 4,594,860 + MIT1002_04097 0.25 +0.3 4,594,923 + MIT1002_04097 0.29 -1.6 4,594,959 + MIT1002_04097 0.32 +0.0
Or see this region's nucleotide sequence