Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03724

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
4,158,210	+		MIT1002_03723	0.15	+0.1
4,158,242	-		MIT1002_03723	0.18	-1.1
4,158,294	-		MIT1002_03723	0.23	+3.0
4,158,311	+		MIT1002_03723	0.24	+0.2
4,158,319	-		MIT1002_03723	0.25	+0.3
4,158,365	+		MIT1002_03723	0.29	-1.2
4,158,383	+		MIT1002_03723	0.31	+1.2
4,158,383	-		MIT1002_03723	0.31	-0.5
4,158,383	-		MIT1002_03723	0.31	-1.0
4,158,416	-		MIT1002_03723	0.34	-0.1
4,158,446	-		MIT1002_03723	0.37	-0.4
4,158,483	+		MIT1002_03723	0.40	-2.4
4,158,483	+		MIT1002_03723	0.40	-1.5
4,158,483	+		MIT1002_03723	0.40	-0.2
4,158,483	+		MIT1002_03723	0.40	+0.0
4,158,491	-		MIT1002_03723	0.41	+0.9
4,158,491	-		MIT1002_03723	0.41	-0.3
4,158,491	-		MIT1002_03723	0.41	-0.1
4,158,491	-		MIT1002_03723	0.41	-2.4
4,158,491	-		MIT1002_03723	0.41	+0.8
4,158,491	-		MIT1002_03723	0.41	+0.2
4,158,491	-		MIT1002_03723	0.41	+0.8
4,158,597	+		MIT1002_03723	0.50	+1.2
4,158,597	+		MIT1002_03723	0.50	+0.9
4,158,597	+		MIT1002_03723	0.50	+1.3
4,158,597	+		MIT1002_03723	0.50	+0.8
4,158,597	+		MIT1002_03723	0.50	-0.7
4,158,597	+		MIT1002_03723	0.50	-0.2
4,158,597	+		MIT1002_03723	0.50	+1.0
4,158,597	+		MIT1002_03723	0.50	+0.5
4,158,605	-		MIT1002_03723	0.51	+1.7
4,158,605	-		MIT1002_03723	0.51	-0.7
4,158,605	-		MIT1002_03723	0.51	-0.6
4,158,605	-		MIT1002_03723	0.51	-0.6
4,158,605	-		MIT1002_03723	0.51	-0.9
4,158,605	-		MIT1002_03723	0.51	-1.1
4,158,605	-		MIT1002_03723	0.51	-0.6
4,158,605	-		MIT1002_03723	0.51	+0.9
4,158,605	-		MIT1002_03723	0.51	-1.2
4,158,605	-		MIT1002_03723	0.51	-0.3
4,158,637	-		MIT1002_03723	0.54	-0.4
4,158,641	-		MIT1002_03723	0.54	+1.5
4,158,654	-		MIT1002_03723	0.56	+1.9
4,158,654	-		MIT1002_03723	0.56	+0.5
4,158,691	+		MIT1002_03723	0.59	+2.7
4,158,756	-		MIT1002_03723	0.65	-1.0
4,158,805	+		MIT1002_03723	0.69	-0.9
4,158,813	-		MIT1002_03723	0.70	+1.4
4,158,836	+		MIT1002_03723	0.72	+0.4
4,158,836	+		MIT1002_03723	0.72	+0.6
4,158,836	+		MIT1002_03723	0.72	-0.8
4,158,836	+		MIT1002_03723	0.72	-0.8
4,158,836	+		MIT1002_03723	0.72	-0.2
4,158,836	+		MIT1002_03723	0.72	-1.0
4,158,844	-		MIT1002_03723	0.73	-2.6
4,158,844	-		MIT1002_03723	0.73	-0.1
4,158,844	-		MIT1002_03723	0.73	-2.3
4,158,844	-		MIT1002_03723	0.73	+0.5
4,158,844	-		MIT1002_03723	0.73	-3.1
4,158,844	-		MIT1002_03723	0.73	-1.5
4,158,844	-		MIT1002_03723	0.73	+0.3
4,158,844	-		MIT1002_03723	0.73	-1.3
4,158,936	+		MIT1002_03723	0.81	+0.0
4,158,936	-		MIT1002_03723	0.81	+1.5
4,158,946	+		MIT1002_03723	0.82	-0.9
4,158,952	+		MIT1002_03723	0.83	-0.1
4,158,973	+		MIT1002_03723	0.85	+0.3
4,159,033	+				-0.9
4,159,095	+				-1.4
4,159,130	-				+1.0
4,159,178	-				-0.3
4,159,223	-				-1.0
4,159,234	-				-0.1
4,159,326	+		MIT1002_03724	0.19	+0.1
4,159,463	+		MIT1002_03724	0.39	+0.1
4,159,541	+		MIT1002_03724	0.50	-0.4
4,159,548	+		MIT1002_03724	0.51	+1.5
4,159,548	+		MIT1002_03724	0.51	+0.2
4,159,548	+		MIT1002_03724	0.51	-0.8
4,159,605	+		MIT1002_03724	0.60	-1.5
4,159,638	+		MIT1002_03724	0.65	+0.9
4,159,638	+		MIT1002_03724	0.65	-0.8
4,159,646	-		MIT1002_03724	0.66	-1.7
4,159,646	-		MIT1002_03724	0.66	-1.0
4,159,683	+		MIT1002_03724	0.71	-1.3
4,159,873	-				+1.0
4,159,883	-				+0.3
4,160,001	+				+0.5
4,160,009	-				+0.1
4,160,037	-				-2.0
4,160,039	+				-1.1
4,160,054	+				-0.8
4,160,054	-				-0.7
4,160,084	-				-2.5
4,160,215	+		MIT1002_03725	0.11	+0.0
4,160,252	+		MIT1002_03725	0.13	+0.5
4,160,276	+		MIT1002_03725	0.14	+0.5
4,160,284	-		MIT1002_03725	0.14	-1.1
4,160,307	+		MIT1002_03725	0.15	-0.4
4,160,307	+		MIT1002_03725	0.15	+0.3
4,160,315	-		MIT1002_03725	0.16	-1.0
4,160,320	-		MIT1002_03725	0.16	+1.3
4,160,344	+		MIT1002_03725	0.17	+0.5
4,160,354	+		MIT1002_03725	0.17	-0.1
4,160,354	+		MIT1002_03725	0.17	+0.9
4,160,354	+		MIT1002_03725	0.17	+1.2
4,160,354	+		MIT1002_03725	0.17	+0.3
4,160,354	+		MIT1002_03725	0.17	-0.2
4,160,362	-		MIT1002_03725	0.18	+0.6
4,160,392	+		MIT1002_03725	0.19	-1.6
4,160,392	+		MIT1002_03725	0.19	-0.6
4,160,400	+		MIT1002_03725	0.19	+1.3
4,160,400	+		MIT1002_03725	0.19	-0.8
4,160,400	+		MIT1002_03725	0.19	-0.3
4,160,408	+		MIT1002_03725	0.20	-0.4
4,160,416	-		MIT1002_03725	0.20	-0.5
4,160,424	+		MIT1002_03725	0.21	+0.6
4,160,424	+		MIT1002_03725	0.21	-0.2
4,160,432	-		MIT1002_03725	0.21	+0.4
4,160,434	+		MIT1002_03725	0.21	-2.5
4,160,442	-		MIT1002_03725	0.21	-0.6
4,160,442	-		MIT1002_03725	0.21	+0.5
4,160,442	-		MIT1002_03725	0.21	+0.7
4,160,442	-		MIT1002_03725	0.21	+0.5
4,160,496	-		MIT1002_03725	0.24	-0.7
4,160,496	-		MIT1002_03725	0.24	-2.1
4,160,542	+		MIT1002_03725	0.26	+2.1
4,160,542	+		MIT1002_03725	0.26	+0.1
4,160,550	-		MIT1002_03725	0.26	+0.7
4,160,550	-		MIT1002_03725	0.26	+1.0
4,160,550	-		MIT1002_03725	0.26	+0.5
4,160,550	-		MIT1002_03725	0.26	-0.4
4,160,600	+		MIT1002_03725	0.28	+0.7
4,160,631	-		MIT1002_03725	0.30	+1.2
4,160,657	-		MIT1002_03725	0.31	+0.5
4,160,676	-		MIT1002_03725	0.32	-2.3
4,160,680	+		MIT1002_03725	0.32	-1.1
4,160,680	+		MIT1002_03725	0.32	+0.5
4,160,683	-		MIT1002_03725	0.32	+0.5
4,160,688	-		MIT1002_03725	0.32	-0.7
4,160,688	-		MIT1002_03725	0.32	+0.1
4,160,754	+		MIT1002_03725	0.35	-0.4
4,160,796	+		MIT1002_03725	0.37	+0.2
4,160,804	-		MIT1002_03725	0.38	-2.3
4,160,812	-		MIT1002_03725	0.38	-0.1
4,160,833	-		MIT1002_03725	0.39	-0.1
4,160,859	+		MIT1002_03725	0.40	-0.6