Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03546

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03545 and MIT1002_03546 are separated by 206 nucleotidesMIT1002_03546 and MIT1002_03547 are separated by 135 nucleotides MIT1002_03545: MIT1002_03545 - Transposase, at 3,964,055 to 3,964,570 _03545 MIT1002_03546: MIT1002_03546 - 5S ribosomal RNA, at 3,964,777 to 3,964,891 _03546 MIT1002_03547: MIT1002_03547 - 23S ribosomal RNA, at 3,965,027 to 3,967,900 _03547 Position (kb) 3964 3965Strain fitness (log2 ratio) -2 -1 0 1at 3964.664 kb on - strandat 3964.690 kb on + strandat 3964.712 kb on - strandat 3964.794 kb on - strand, within MIT1002_03546at 3964.796 kb on - strand, within MIT1002_03546

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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3,964,664 - -0.6
3,964,690 + +1.1
3,964,712 - -0.7
3,964,794 - MIT1002_03546 0.15 -2.4
3,964,796 - MIT1002_03546 0.17 -1.9

Or see this region's nucleotide sequence