Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02998

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
3,335,157	-				-0.5
3,335,159	+				-0.4
3,335,190	+				+0.1
3,335,195	+				-0.4
3,335,195	+				+0.2
3,335,197	+				-0.8
3,335,203	-				-1.0
3,335,468	+		MIT1002_02997	0.34	+0.1
3,335,518	+		MIT1002_02997	0.41	-1.4
3,335,525	+		MIT1002_02997	0.42	-0.4
3,335,664	+		MIT1002_02997	0.62	-1.1
3,335,706	-		MIT1002_02997	0.68	+0.4
3,335,706	-		MIT1002_02997	0.68	-2.0
3,335,729	-		MIT1002_02997	0.71	-1.1
3,335,741	+		MIT1002_02997	0.73	-0.4
3,335,749	-		MIT1002_02997	0.74	-0.8
3,335,812	+		MIT1002_02997	0.83	+0.7
3,335,820	-		MIT1002_02997	0.84	+1.2
3,335,866	+				-0.3
3,335,872	-				-1.6
3,336,052	+				+0.1
3,336,060	-				-0.1
3,336,079	+				+0.5
3,336,079	+				-2.1
3,336,087	-				-0.1
3,336,103	+				+0.3
3,336,103	+				+3.1
3,336,104	-				+1.4
3,336,104	-				+0.5
3,336,111	-				-0.3
3,336,111	-				-0.0
3,336,111	-				-1.5
3,336,146	+				+0.8
3,336,189	-				+0.2
3,336,393	+				-2.3
3,336,410	-				+1.1
3,336,536	+		MIT1002_02998	0.14	-0.0
3,336,544	-		MIT1002_02998	0.14	+0.1
3,336,544	-		MIT1002_02998	0.14	+0.1
3,336,546	+		MIT1002_02998	0.14	+0.3
3,336,657	-		MIT1002_02998	0.18	-2.6
3,336,684	-		MIT1002_02998	0.19	+1.9
3,336,694	-		MIT1002_02998	0.19	+1.1
3,336,739	+		MIT1002_02998	0.20	-0.5
3,336,739	+		MIT1002_02998	0.20	-0.7
3,336,747	-		MIT1002_02998	0.21	-2.7
3,336,764	+		MIT1002_02998	0.21	+1.0
3,336,764	+		MIT1002_02998	0.21	-3.3
3,336,764	+		MIT1002_02998	0.21	+0.9
3,336,765	-		MIT1002_02998	0.21	-1.4
3,336,767	-		MIT1002_02998	0.21	-0.6
3,336,772	-		MIT1002_02998	0.22	-0.6
3,336,774	+		MIT1002_02998	0.22	-1.0
3,336,791	-		MIT1002_02998	0.22	+1.1
3,336,829	+		MIT1002_02998	0.23	-0.4
3,336,830	+		MIT1002_02998	0.23	-1.2
3,336,854	-		MIT1002_02998	0.24	+1.2
3,336,872	-		MIT1002_02998	0.25	-0.7
3,336,879	-		MIT1002_02998	0.25	+1.9
3,336,919	-		MIT1002_02998	0.26	+0.4
3,336,935	+		MIT1002_02998	0.27	-1.0
3,336,943	-		MIT1002_02998	0.27	-1.3
3,336,943	-		MIT1002_02998	0.27	+2.4
3,337,013	-		MIT1002_02998	0.29	-0.8
3,337,013	-		MIT1002_02998	0.29	+0.3
3,337,013	-		MIT1002_02998	0.29	-1.4
3,337,013	-		MIT1002_02998	0.29	+0.2
3,337,045	-		MIT1002_02998	0.30	-1.8
3,337,047	+		MIT1002_02998	0.30	+0.1
3,337,059	+		MIT1002_02998	0.31	+0.6
3,337,064	+		MIT1002_02998	0.31	-0.8
3,337,064	+		MIT1002_02998	0.31	-0.5
3,337,094	+		MIT1002_02998	0.32	+0.1
3,337,108	-		MIT1002_02998	0.32	-0.9
3,337,108	-		MIT1002_02998	0.32	-2.6
3,337,125	+		MIT1002_02998	0.33	-0.9
3,337,130	+		MIT1002_02998	0.33	+1.5
3,337,133	-		MIT1002_02998	0.33	+0.5
3,337,133	-		MIT1002_02998	0.33	+0.8
3,337,140	+		MIT1002_02998	0.33	-0.7
3,337,173	+		MIT1002_02998	0.34	+0.5
3,337,260	+		MIT1002_02998	0.37	+2.3
3,337,307	+		MIT1002_02998	0.39	+0.0
3,337,328	+		MIT1002_02998	0.39	+0.1
3,337,330	-		MIT1002_02998	0.39	-0.9
3,337,338	+		MIT1002_02998	0.40	-0.6
3,337,408	+		MIT1002_02998	0.42	+0.1
3,337,433	+		MIT1002_02998	0.43	-0.6
3,337,441	-		MIT1002_02998	0.43	-0.9
3,337,451	-		MIT1002_02998	0.43	+0.5
3,337,464	-		MIT1002_02998	0.44	-0.8
3,337,464	-		MIT1002_02998	0.44	+1.4
3,337,464	-		MIT1002_02998	0.44	-0.3
3,337,549	-		MIT1002_02998	0.46	-0.4
3,337,559	-		MIT1002_02998	0.47	-0.1
3,337,561	+		MIT1002_02998	0.47	-0.6
3,337,569	-		MIT1002_02998	0.47	+1.3
3,337,597	+		MIT1002_02998	0.48	+0.2
3,337,605	-		MIT1002_02998	0.48	+0.5
3,337,607	+		MIT1002_02998	0.48	-0.6
3,337,612	-		MIT1002_02998	0.48	+2.3
3,337,615	-		MIT1002_02998	0.49	+1.3
3,337,671	+		MIT1002_02998	0.50	-1.4
3,337,694	+		MIT1002_02998	0.51	-2.8
3,337,694	+		MIT1002_02998	0.51	-1.2
3,337,740	+		MIT1002_02998	0.53	+0.1
3,337,745	+		MIT1002_02998	0.53	+2.0
3,337,837	-		MIT1002_02998	0.56	-1.1
3,337,863	-		MIT1002_02998	0.56	-0.1
3,337,874	+		MIT1002_02998	0.57	-0.8
3,337,928	-		MIT1002_02998	0.59	-0.2
3,337,957	+		MIT1002_02998	0.59	+0.8
3,338,000	+		MIT1002_02998	0.61	+2.6
3,338,003	-		MIT1002_02998	0.61	-0.2
3,338,019	+		MIT1002_02998	0.61	-1.9
3,338,066	+		MIT1002_02998	0.63	-1.6
3,338,114	+		MIT1002_02998	0.65	+0.1
3,338,155	-		MIT1002_02998	0.66	-0.5
3,338,269	+		MIT1002_02998	0.69	+0.2
3,338,277	-		MIT1002_02998	0.70	-0.2
3,338,277	-		MIT1002_02998	0.70	+0.3
3,338,277	-		MIT1002_02998	0.70	-0.2
3,338,277	-		MIT1002_02998	0.70	+1.7
3,338,277	-		MIT1002_02998	0.70	+0.1
3,338,277	-		MIT1002_02998	0.70	+0.6
3,338,321	+		MIT1002_02998	0.71	-0.1
3,338,329	-		MIT1002_02998	0.71	-0.1
3,338,370	-		MIT1002_02998	0.73	-0.6
3,338,389	+		MIT1002_02998	0.73	-1.2
3,338,539	+		MIT1002_02998	0.78	-0.2
3,338,539	+		MIT1002_02998	0.78	+0.8
3,338,539	+		MIT1002_02998	0.78	-0.5
3,338,540	+		MIT1002_02998	0.78	+1.5
3,338,552	+		MIT1002_02998	0.79	-0.8
3,338,622	-		MIT1002_02998	0.81	-0.2
3,338,645	+		MIT1002_02998	0.82	+0.9
3,338,645	+		MIT1002_02998	0.82	-0.0
3,338,653	-		MIT1002_02998	0.82	+1.3
3,338,732	-		MIT1002_02998	0.84	+1.5
3,338,738	+		MIT1002_02998	0.85	-0.4
3,338,764	-		MIT1002_02998	0.85	-0.7
3,338,773	+		MIT1002_02998	0.86	+0.1
3,338,805	+		MIT1002_02998	0.87	+1.6
3,338,832	+		MIT1002_02998	0.88	+0.7
3,338,897	-		MIT1002_02998	0.90	+0.3
3,338,920	-				+0.1
3,338,944	-				-1.6
3,338,988	-				+0.1
3,339,050	+				-1.5
3,339,276	+				-0.8
3,339,276	+				-0.2
3,339,276	+				+1.5
3,339,368	+		MIT1002_02999	0.12	+1.3
3,339,374	-		MIT1002_02999	0.12	+1.2
3,339,403	+		MIT1002_02999	0.14	+0.4
3,339,413	+		MIT1002_02999	0.15	+0.1
3,339,439	+		MIT1002_02999	0.17	+1.2
3,339,464	-		MIT1002_02999	0.19	-1.0
3,339,493	+		MIT1002_02999	0.21	-0.7
3,339,506	+		MIT1002_02999	0.22	+0.1
3,339,506	+		MIT1002_02999	0.22	+0.3
3,339,536	-		MIT1002_02999	0.25	-1.1
3,339,677	+		MIT1002_02999	0.36	-0.2
3,339,698	+		MIT1002_02999	0.37	-0.5
3,339,699	+		MIT1002_02999	0.37	+1.0
3,339,836	-		MIT1002_02999	0.48	+0.8
3,340,110	-		MIT1002_02999	0.70	+0.3
3,340,129	-		MIT1002_02999	0.71	+2.1
3,340,155	+		MIT1002_02999	0.73	+0.9
3,340,199	+		MIT1002_02999	0.77	-0.6
3,340,220	+		MIT1002_02999	0.78	-1.3