Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02969

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
3,303,518	+		MIT1002_02968	0.25	-1.0
3,303,530	-		MIT1002_02968	0.26	+0.6
3,303,576	-		MIT1002_02968	0.29	+2.4
3,303,638	+		MIT1002_02968	0.35	-0.9
3,303,703	+		MIT1002_02968	0.40	+0.5
3,303,721	+		MIT1002_02968	0.42	+0.4
3,303,721	+		MIT1002_02968	0.42	+0.1
3,303,739	-		MIT1002_02968	0.43	+0.3
3,303,739	-		MIT1002_02968	0.43	-0.1
3,303,739	-		MIT1002_02968	0.43	+1.6
3,303,739	-		MIT1002_02968	0.43	+0.4
3,303,739	-		MIT1002_02968	0.43	-0.0
3,303,741	+		MIT1002_02968	0.43	-0.8
3,303,769	+		MIT1002_02968	0.46	+0.3
3,303,854	-		MIT1002_02968	0.53	-1.2
3,303,902	+		MIT1002_02968	0.57	-2.5
3,303,910	-		MIT1002_02968	0.58	+2.2
3,303,934	+		MIT1002_02968	0.60	-1.0
3,303,952	+		MIT1002_02968	0.61	+2.4
3,303,952	+		MIT1002_02968	0.61	-0.9
3,303,952	+		MIT1002_02968	0.61	+0.8
3,303,952	+		MIT1002_02968	0.61	+2.3
3,303,960	-		MIT1002_02968	0.62	-1.2
3,303,983	-		MIT1002_02968	0.64	-2.5
3,303,994	+		MIT1002_02968	0.65	+2.1
3,304,002	-		MIT1002_02968	0.66	-0.4
3,304,135	+		MIT1002_02968	0.77	-0.0
3,304,135	+		MIT1002_02968	0.77	-0.9
3,304,143	-		MIT1002_02968	0.78	+0.2
3,304,167	-		MIT1002_02968	0.80	-1.4
3,304,237	+		MIT1002_02968	0.85	-0.6
3,304,392	+				+1.4
3,304,394	+				-0.9
3,304,394	+				-0.4
3,304,402	-				+0.2
3,304,407	+				-0.7
3,304,561	+				+0.4
3,304,564	+				+0.2
3,304,567	-				+0.7
3,304,571	+				-1.1
3,304,572	-				-0.5
3,304,572	-				-1.4
3,304,572	-				+0.5
3,304,579	-				-0.2
3,304,579	-				+0.8
3,304,597	-				-0.0
3,304,757	+		MIT1002_02969	0.17	-0.1
3,304,758	+		MIT1002_02969	0.17	+0.2
3,304,765	-		MIT1002_02969	0.18	+1.5
3,304,823	+		MIT1002_02969	0.21	+0.2
3,304,916	-		MIT1002_02969	0.28	-0.7
3,304,957	-		MIT1002_02969	0.30	-0.1
3,304,957	-		MIT1002_02969	0.30	+0.9
3,304,959	+		MIT1002_02969	0.30	-1.6
3,304,959	+		MIT1002_02969	0.30	-0.3
3,304,967	-		MIT1002_02969	0.31	+1.0
3,304,967	-		MIT1002_02969	0.31	-0.1
3,304,967	-		MIT1002_02969	0.31	+0.4
3,304,986	+		MIT1002_02969	0.32	-0.4
3,305,005	+		MIT1002_02969	0.33	+1.3
3,305,008	+		MIT1002_02969	0.34	+0.8
3,305,008	+		MIT1002_02969	0.34	+0.3
3,305,013	+		MIT1002_02969	0.34	+0.2
3,305,013	+		MIT1002_02969	0.34	+0.1
3,305,013	+		MIT1002_02969	0.34	-0.6
3,305,021	-		MIT1002_02969	0.34	-1.3
3,305,021	-		MIT1002_02969	0.34	-0.3
3,305,021	-		MIT1002_02969	0.34	+1.2
3,305,076	+		MIT1002_02969	0.38	+0.9
3,305,076	+		MIT1002_02969	0.38	-0.5
3,305,200	+		MIT1002_02969	0.46	-0.1
3,305,233	-		MIT1002_02969	0.48	-0.8
3,305,240	-		MIT1002_02969	0.49	-0.7
3,305,267	-		MIT1002_02969	0.51	-1.2
3,305,324	+		MIT1002_02969	0.54	-0.2
3,305,325	+		MIT1002_02969	0.55	+0.5
3,305,332	-		MIT1002_02969	0.55	-0.6
3,305,337	+		MIT1002_02969	0.55	+0.8
3,305,369	+		MIT1002_02969	0.57	+0.1
3,305,388	-		MIT1002_02969	0.59	-0.3
3,305,390	-		MIT1002_02969	0.59	+0.5
3,305,432	+		MIT1002_02969	0.62	-0.4
3,305,502	-		MIT1002_02969	0.66	+2.6
3,305,510	+		MIT1002_02969	0.67	-0.4
3,305,598	+		MIT1002_02969	0.73	-1.0
3,305,600	+		MIT1002_02969	0.73	+0.4
3,305,608	-		MIT1002_02969	0.73	+0.0
3,305,613	-		MIT1002_02969	0.74	-2.0
3,305,694	+		MIT1002_02969	0.79	-0.8
3,305,700	+		MIT1002_02969	0.79	-0.3
3,305,738	-		MIT1002_02969	0.82	+0.7
3,305,960	+				-0.3
3,306,006	+				+0.2
3,306,102	-				+0.4
3,306,138	+				-0.4
3,306,138	+				-0.0
3,306,146	-				-1.6
3,306,191	+				+1.0
3,306,198	-				-1.1
3,306,207	+				+0.0
3,306,207	+				+0.4
3,306,338	-		MIT1002_02970	0.15	+0.5
3,306,338	-		MIT1002_02970	0.15	-2.9
3,306,366	+		MIT1002_02970	0.18	+2.8
3,306,528	+		MIT1002_02970	0.38	+1.4
3,306,536	-		MIT1002_02970	0.39	+0.2
3,306,537	-		MIT1002_02970	0.39	+1.0
3,306,555	+		MIT1002_02970	0.41	-0.9
3,306,565	+		MIT1002_02970	0.42	-0.5
3,306,570	+		MIT1002_02970	0.43	+0.4
3,306,573	-		MIT1002_02970	0.43	-0.8
3,306,573	-		MIT1002_02970	0.43	-2.5
3,306,622	+		MIT1002_02970	0.49	-0.6
3,306,628	-		MIT1002_02970	0.50	-0.1
3,306,628	-		MIT1002_02970	0.50	-0.1
3,306,798	-		MIT1002_02970	0.70	-3.2
3,306,823	-		MIT1002_02970	0.73	+0.6
3,306,885	-		MIT1002_02970	0.81	-1.1
3,306,899	-		MIT1002_02970	0.83	-0.6
3,306,906	+		MIT1002_02970	0.84	+0.0
3,306,917	+		MIT1002_02970	0.85	+0.0
3,306,925	-		MIT1002_02970	0.86	-1.5
3,306,925	-		MIT1002_02970	0.86	+0.6
3,306,925	-		MIT1002_02970	0.86	+1.2
3,306,925	-		MIT1002_02970	0.86	+1.1
3,306,925	-		MIT1002_02970	0.86	+0.1
3,306,925	-		MIT1002_02970	0.86	+0.0
3,306,944	-		MIT1002_02970	0.88	-1.1