Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02706

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
3,006,167	-		MIT1002_02704	0.89	-0.9
3,006,219	-				+2.2
3,006,221	-				+0.6
3,006,232	+				+0.2
3,006,310	-				+1.0
3,006,390	+				-0.8
3,006,390	+				-1.5
3,006,398	-				-1.0
3,006,480	+				+0.6
3,006,493	-				+0.1
3,006,493	-				-0.1
3,006,591	+				+0.1
3,006,602	-				-0.9
3,006,698	-		MIT1002_02705	0.16	-0.1
3,006,705	-		MIT1002_02705	0.18	+0.2
3,006,710	-		MIT1002_02705	0.19	+1.8
3,006,739	-		MIT1002_02705	0.26	+1.5
3,006,773	+		MIT1002_02705	0.35	-1.2
3,006,775	-		MIT1002_02705	0.35	+0.1
3,006,777	-		MIT1002_02705	0.36	+2.1
3,006,787	-		MIT1002_02705	0.38	+1.4
3,006,787	-		MIT1002_02705	0.38	-2.1
3,006,804	-		MIT1002_02705	0.42	+1.5
3,006,829	-		MIT1002_02705	0.48	-0.4
3,006,836	+		MIT1002_02705	0.50	+0.3
3,006,867	-		MIT1002_02705	0.58	+3.3
3,006,892	+		MIT1002_02705	0.64	-1.1
3,006,923	+		MIT1002_02705	0.71	-0.2
3,006,967	-		MIT1002_02705	0.82	-0.7
3,007,150	+				-0.4
3,007,168	+				+0.3
3,007,168	-				-0.6
3,007,173	+				+0.4
3,007,203	-				-0.7
3,007,267	-				-0.6
3,007,290	-		MIT1002_02706	0.10	-0.5
3,007,292	+		MIT1002_02706	0.11	-0.3
3,007,328	-		MIT1002_02706	0.13	+1.7
3,007,397	+		MIT1002_02706	0.18	-1.1
3,007,402	+		MIT1002_02706	0.19	-0.2
3,007,402	+		MIT1002_02706	0.19	-0.0
3,007,405	-		MIT1002_02706	0.19	-1.4
3,007,407	+		MIT1002_02706	0.19	+0.3
3,007,423	+		MIT1002_02706	0.20	+1.1
3,007,431	-		MIT1002_02706	0.21	-0.4
3,007,431	-		MIT1002_02706	0.21	-0.3
3,007,431	-		MIT1002_02706	0.21	+0.0
3,007,431	-		MIT1002_02706	0.21	-0.5
3,007,461	+		MIT1002_02706	0.23	+1.0
3,007,556	-		MIT1002_02706	0.30	-2.4
3,007,594	+		MIT1002_02706	0.33	-1.2
3,007,627	+		MIT1002_02706	0.35	+1.0
3,007,627	+		MIT1002_02706	0.35	+0.7
3,007,729	+		MIT1002_02706	0.42	-0.2
3,007,801	+		MIT1002_02706	0.48	-1.3
3,007,801	+		MIT1002_02706	0.48	-1.1
3,007,949	+		MIT1002_02706	0.59	-2.0
3,007,959	+		MIT1002_02706	0.59	-0.6
3,007,967	-		MIT1002_02706	0.60	-1.2
3,008,007	+		MIT1002_02706	0.63	+0.5
3,008,026	+		MIT1002_02706	0.64	+1.0
3,008,027	+		MIT1002_02706	0.64	-0.9
3,008,051	-		MIT1002_02706	0.66	-0.7
3,008,108	+		MIT1002_02706	0.70	+1.4
3,008,248	+		MIT1002_02706	0.80	-0.8
3,008,253	-		MIT1002_02706	0.81	+0.2
3,008,266	-		MIT1002_02706	0.82	+0.5
3,008,266	-		MIT1002_02706	0.82	-2.2
3,008,302	+		MIT1002_02706	0.84	-1.4
3,008,303	-		MIT1002_02706	0.84	+0.2
3,008,358	+		MIT1002_02706	0.88	+0.0
3,008,358	+		MIT1002_02706	0.88	-2.5
3,008,358	+		MIT1002_02706	0.88	+0.1
3,008,372	+		MIT1002_02706	0.89	-0.5
3,008,430	+				-0.8
3,008,444	+				-0.6
3,008,451	-				+0.4
3,008,460	+				-0.6
3,008,497	-				-0.0
3,008,507	-				+0.2
3,008,507	-				-2.1
3,008,575	+				+1.0
3,008,580	+				-0.7
3,008,587	+				+0.8
3,008,588	-				+0.7
3,008,588	-				-1.0
3,008,590	-				+1.8
3,008,626	-				+1.3
3,008,754	-				-0.8
3,008,754	-				+0.2
3,008,754	-				-0.4
3,008,765	-				-0.2
3,008,765	-				-1.6
3,008,771	+				-1.8
3,008,775	-				+0.4
3,008,780	-				-0.5
3,008,788	+				+0.5
3,008,788	+				+0.2
3,008,855	+				+0.8
3,008,855	+				-0.4
3,008,860	+				+0.7
3,008,874	+				-0.7
3,008,874	+				-0.4
3,008,874	+				-1.2
3,008,874	+				+0.4
3,008,874	+				-0.1
3,008,882	-				-0.1
3,008,882	-				+0.2
3,008,882	-				-0.3
3,008,935	-				-0.2
3,008,977	+		MIT1002_02707	0.11	+0.1
3,009,028	-		MIT1002_02707	0.13	+1.4
3,009,114	+		MIT1002_02707	0.16	-0.9
3,009,128	-		MIT1002_02707	0.17	+0.4
3,009,144	+		MIT1002_02707	0.17	+1.0
3,009,152	-		MIT1002_02707	0.18	-1.8
3,009,167	-		MIT1002_02707	0.18	-0.2
3,009,169	+		MIT1002_02707	0.18	-0.7
3,009,169	+		MIT1002_02707	0.18	-1.2
3,009,169	+		MIT1002_02707	0.18	+1.4
3,009,169	+		MIT1002_02707	0.18	-0.4
3,009,169	+		MIT1002_02707	0.18	+0.8
3,009,169	+		MIT1002_02707	0.18	+0.5
3,009,177	-		MIT1002_02707	0.19	-0.3
3,009,177	-		MIT1002_02707	0.19	-0.6
3,009,177	-		MIT1002_02707	0.19	-0.8
3,009,248	-		MIT1002_02707	0.21	+0.2
3,009,274	-		MIT1002_02707	0.23	+2.0
3,009,283	+		MIT1002_02707	0.23	-0.9
3,009,336	-		MIT1002_02707	0.25	-1.4
3,009,420	+		MIT1002_02707	0.28	+1.1
3,009,480	+		MIT1002_02707	0.31	+0.5
3,009,480	+		MIT1002_02707	0.31	+1.3
3,009,480	+		MIT1002_02707	0.31	+0.8
3,009,480	+		MIT1002_02707	0.31	-0.1