Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02642

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
2,933,863	+		MIT1002_02641	0.19	+3.0
2,933,944	+		MIT1002_02641	0.28	+0.7
2,933,944	+		MIT1002_02641	0.28	+0.2
2,933,944	+		MIT1002_02641	0.28	+0.1
2,934,009	-		MIT1002_02641	0.36	-0.2
2,934,108	-		MIT1002_02641	0.48	+1.6
2,934,147	-		MIT1002_02641	0.52	+1.3
2,934,147	-		MIT1002_02641	0.52	-1.4
2,934,161	+		MIT1002_02641	0.54	-0.3
2,934,164	-		MIT1002_02641	0.54	-1.1
2,934,260	+		MIT1002_02641	0.66	-0.4
2,934,379	-		MIT1002_02641	0.80	+1.0
2,934,410	+		MIT1002_02641	0.84	+2.0
2,934,410	+		MIT1002_02641	0.84	-0.4
2,934,424	-		MIT1002_02641	0.85	-1.5
2,934,495	+				+0.1
2,934,500	+				+1.7
2,934,507	+				-1.7
2,934,521	+				-0.1
2,934,548	+				+1.3
2,934,599	-				+0.4
2,934,610	-				-0.3
2,934,636	+				-0.2
2,934,762	-				-0.4
2,934,776	+				+0.7
2,934,819	-				-1.4
2,934,835	+				-0.6
2,934,871	-				+1.1
2,934,952	-				+0.8
2,935,060	-				-1.0
2,935,070	+				-0.7
2,935,172	+		MIT1002_02642	0.13	+0.0
2,935,242	+		MIT1002_02642	0.15	+0.8
2,935,243	+		MIT1002_02642	0.15	+0.9
2,935,350	+		MIT1002_02642	0.19	-1.7
2,935,384	-		MIT1002_02642	0.20	-0.7
2,935,384	-		MIT1002_02642	0.20	-1.2
2,935,385	+		MIT1002_02642	0.20	+0.3
2,935,393	-		MIT1002_02642	0.20	+0.2
2,935,440	-		MIT1002_02642	0.22	-2.0
2,935,442	+		MIT1002_02642	0.22	-1.2
2,935,484	-		MIT1002_02642	0.23	+0.6
2,935,519	+		MIT1002_02642	0.25	-0.0
2,935,598	+		MIT1002_02642	0.27	-1.2
2,935,598	+		MIT1002_02642	0.27	-1.7
2,935,660	+		MIT1002_02642	0.30	-3.0
2,935,672	+		MIT1002_02642	0.30	-0.2
2,935,704	-		MIT1002_02642	0.31	-0.0
2,935,740	+		MIT1002_02642	0.32	-2.0
2,935,823	+		MIT1002_02642	0.35	-0.2
2,935,823	+		MIT1002_02642	0.35	-0.5
2,935,875	-		MIT1002_02642	0.37	-0.2
2,935,875	-		MIT1002_02642	0.37	-0.8
2,935,885	-		MIT1002_02642	0.37	-0.2
2,935,885	-		MIT1002_02642	0.37	+0.9
2,935,939	+		MIT1002_02642	0.39	+0.8
2,935,947	-		MIT1002_02642	0.39	-0.0
2,935,972	+		MIT1002_02642	0.40	+0.8
2,935,992	+		MIT1002_02642	0.41	+0.3
2,935,992	+		MIT1002_02642	0.41	-0.6
2,936,000	-		MIT1002_02642	0.41	-1.5
2,936,074	+		MIT1002_02642	0.44	-1.1
2,936,108	+		MIT1002_02642	0.45	+1.1
2,936,195	+		MIT1002_02642	0.48	-0.1
2,936,246	+		MIT1002_02642	0.50	-1.0
2,936,281	+		MIT1002_02642	0.51	-1.6
2,936,288	+		MIT1002_02642	0.51	+1.1
2,936,296	-		MIT1002_02642	0.52	+0.2
2,936,351	-		MIT1002_02642	0.53	-1.0
2,936,454	-		MIT1002_02642	0.57	-0.4
2,936,499	-		MIT1002_02642	0.59	+0.8
2,936,572	-		MIT1002_02642	0.61	-1.4
2,936,572	-		MIT1002_02642	0.61	+0.5
2,936,604	-		MIT1002_02642	0.62	-0.7
2,936,722	-		MIT1002_02642	0.66	+0.2
2,936,779	-		MIT1002_02642	0.68	-0.2
2,936,963	-		MIT1002_02642	0.75	-1.0
2,937,014	+		MIT1002_02642	0.76	+0.7
2,937,077	-		MIT1002_02642	0.79	-0.2
2,937,106	-		MIT1002_02642	0.80	+0.9
2,937,133	+		MIT1002_02642	0.81	+0.1
2,937,141	-		MIT1002_02642	0.81	-0.4
2,937,213	-		MIT1002_02642	0.83	+0.1
2,937,262	+		MIT1002_02642	0.85	+1.3
2,937,290	-		MIT1002_02642	0.86	+1.0
2,937,434	-				+0.6
2,937,453	-				+1.0
2,937,466	+				+0.4
2,937,466	+				+0.5
2,937,467	+				-0.1
2,937,467	+				+0.6
2,937,475	-				-0.3
2,937,496	-				-1.4
2,937,512	+				+0.4
2,937,515	-				-2.6
2,937,520	-				+0.3
2,937,574	+				-0.0
2,937,636	+				+1.7
2,937,641	+				-0.0
2,937,664	-				-0.1
2,937,664	-				-1.7
2,937,671	+				+2.2
2,937,696	-				-0.1
2,937,696	-				+1.6
2,937,698	-				-0.0
2,937,732	-				+0.3
2,937,892	+				+0.3
2,937,900	-				+0.9
2,938,082	-				-0.5
2,938,165	+		MIT1002_02643	0.15	-2.0
2,938,176	+		MIT1002_02643	0.17	-0.4
2,938,176	+		MIT1002_02643	0.17	+1.6
2,938,176	+		MIT1002_02643	0.17	-1.3
2,938,179	+		MIT1002_02643	0.18	-1.0
2,938,179	+		MIT1002_02643	0.18	+0.3
2,938,184	-		MIT1002_02643	0.18	+2.0
2,938,184	-		MIT1002_02643	0.18	-1.9
2,938,187	-		MIT1002_02643	0.19	+1.7
2,938,199	-		MIT1002_02643	0.21	+1.2
2,938,322	+		MIT1002_02643	0.40	-0.9
2,938,336	+		MIT1002_02643	0.42	-0.6
2,938,473	+		MIT1002_02643	0.64	-0.4
2,938,480	+		MIT1002_02643	0.65	-0.2
2,938,500	-		MIT1002_02643	0.68	+0.8
2,938,509	+		MIT1002_02643	0.69	-2.9