Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02611

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
2,909,071	-				-0.8
2,909,141	-				-0.7
2,909,166	-				+1.2
2,909,222	+				+1.7
2,909,280	+		MIT1002_02610	0.18	-0.0
2,909,293	+		MIT1002_02610	0.20	+1.8
2,909,293	+		MIT1002_02610	0.20	+1.4
2,909,301	-		MIT1002_02610	0.21	+0.6
2,909,301	-		MIT1002_02610	0.21	+0.0
2,909,301	-		MIT1002_02610	0.21	-2.3
2,909,301	-		MIT1002_02610	0.21	-3.1
2,909,303	+		MIT1002_02610	0.21	+0.1
2,909,303	+		MIT1002_02610	0.21	-0.0
2,909,303	+		MIT1002_02610	0.21	-1.2
2,909,303	+		MIT1002_02610	0.21	-0.9
2,909,303	+		MIT1002_02610	0.21	+1.1
2,909,303	+		MIT1002_02610	0.21	-0.7
2,909,343	-		MIT1002_02610	0.28	+0.2
2,909,343	-		MIT1002_02610	0.28	-0.0
2,909,541	-		MIT1002_02610	0.60	-0.5
2,909,541	-		MIT1002_02610	0.60	+0.1
2,909,541	-		MIT1002_02610	0.60	+0.2
2,909,541	-		MIT1002_02610	0.60	-0.1
2,909,598	-		MIT1002_02610	0.70	-0.3
2,909,598	-		MIT1002_02610	0.70	-2.2
2,909,600	+		MIT1002_02610	0.70	-0.6
2,909,608	-		MIT1002_02610	0.71	+3.6
2,909,612	+		MIT1002_02610	0.72	-0.2
2,909,612	+		MIT1002_02610	0.72	+0.4
2,909,612	+		MIT1002_02610	0.72	-1.0
2,909,643	-		MIT1002_02610	0.77	+0.9
2,909,806	+				-1.3
2,909,868	+				-0.7
2,909,896	+				-0.3
2,909,904	-				-0.0
2,910,086	-				-0.6
2,910,107	-				+1.7
2,910,107	-				-0.6
2,910,216	-		MIT1002_02611	0.17	-1.9
2,910,233	+		MIT1002_02611	0.19	-0.4
2,910,238	+		MIT1002_02611	0.19	-1.8
2,910,238	+		MIT1002_02611	0.19	-1.9
2,910,246	-		MIT1002_02611	0.20	-2.0
2,910,246	-		MIT1002_02611	0.20	-0.9
2,910,249	+		MIT1002_02611	0.21	-1.3
2,910,332	+		MIT1002_02611	0.29	+0.6
2,910,340	-		MIT1002_02611	0.30	-0.9
2,910,391	+		MIT1002_02611	0.35	-0.4
2,910,404	+		MIT1002_02611	0.37	-1.1
2,910,407	-		MIT1002_02611	0.37	-2.3
2,910,436	+		MIT1002_02611	0.40	-0.7
2,910,494	+		MIT1002_02611	0.46	-1.0
2,910,502	-		MIT1002_02611	0.47	-1.7
2,910,511	+		MIT1002_02611	0.48	-3.4
2,910,517	-		MIT1002_02611	0.48	+0.6
2,910,580	+		MIT1002_02611	0.55	+0.1
2,910,598	+		MIT1002_02611	0.56	-0.2
2,910,733	+		MIT1002_02611	0.70	+0.1
2,910,741	-		MIT1002_02611	0.71	-0.5
2,910,899	-		MIT1002_02611	0.87	-1.3
2,910,901	+		MIT1002_02611	0.88	-1.7
2,910,909	-		MIT1002_02611	0.88	-1.0
2,910,967	-				-0.0
2,911,036	-				+0.5
2,911,098	+				-0.3
2,911,100	-				+1.7
2,911,101	-				-1.3
2,911,128	+				+2.0
2,911,136	-				-1.4
2,911,205	+				+1.4
2,911,312	-		MIT1002_02612	0.79	+3.3
2,911,371	+				+0.6
2,911,383	+				+1.4
2,911,386	-				-0.4
2,911,391	-				+0.6
2,911,438	-				+1.4
2,911,497	+				+2.7
2,911,538	+				+1.4
2,911,613	-		MIT1002_02613	0.34	-1.3
2,911,691	-		MIT1002_02613	0.68	-1.4
2,911,701	+		MIT1002_02613	0.72	-0.0
2,911,711	+		MIT1002_02613	0.76	+1.4
2,911,716	+		MIT1002_02613	0.78	+0.7
2,911,719	-		MIT1002_02613	0.80	+1.0
2,911,733	+		MIT1002_02613	0.86	-0.5
2,911,734	+		MIT1002_02613	0.86	+0.0
2,911,771	+				-0.2
2,911,811	-				-1.4
2,911,915	+				-0.5
2,911,944	+				-0.9
2,911,997	+				+0.5
2,912,007	+				+1.1