Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02598

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
2,897,613	-		MIT1002_02597	0.16	+0.1
2,897,631	+		MIT1002_02597	0.18	-0.8
2,897,631	+		MIT1002_02597	0.18	-0.2
2,897,631	+		MIT1002_02597	0.18	-2.7
2,897,631	+		MIT1002_02597	0.18	+0.3
2,897,639	-		MIT1002_02597	0.19	+1.6
2,897,659	+		MIT1002_02597	0.21	+0.4
2,897,720	+		MIT1002_02597	0.27	-1.0
2,897,821	-		MIT1002_02597	0.38	-0.1
2,897,911	-		MIT1002_02597	0.48	+1.8
2,897,978	-		MIT1002_02597	0.55	+0.6
2,897,981	+		MIT1002_02597	0.56	-1.3
2,898,024	+		MIT1002_02597	0.60	+0.2
2,898,024	+		MIT1002_02597	0.60	+0.4
2,898,024	+		MIT1002_02597	0.60	+1.0
2,898,032	-		MIT1002_02597	0.61	+0.2
2,898,032	-		MIT1002_02597	0.61	+0.0
2,898,052	-		MIT1002_02597	0.63	+0.2
2,898,074	+		MIT1002_02597	0.66	+1.1
2,898,074	+		MIT1002_02597	0.66	-0.3
2,898,074	+		MIT1002_02597	0.66	-1.1
2,898,211	+		MIT1002_02597	0.81	-1.7
2,898,307	-				+1.3
2,898,313	+				-3.3
2,898,356	+				+1.4
2,898,370	+				+0.1
2,898,385	-				-0.3
2,898,402	+				+0.4
2,898,402	+				-1.2
2,898,402	+				+0.4
2,898,410	-				-0.2
2,898,410	-				+1.2
2,898,484	+				-0.2
2,898,595	+				+2.8
2,898,603	-				-0.2
2,898,637	-				+0.7
2,898,664	-		MIT1002_02598	0.11	-0.1
2,898,691	-		MIT1002_02598	0.13	+0.4
2,898,691	-		MIT1002_02598	0.13	-1.9
2,898,691	-		MIT1002_02598	0.13	-0.5
2,898,718	-		MIT1002_02598	0.16	-1.6
2,898,728	-		MIT1002_02598	0.17	+1.2
2,898,790	+		MIT1002_02598	0.23	+0.8
2,898,790	+		MIT1002_02598	0.23	+0.5
2,898,831	-		MIT1002_02598	0.27	+0.7
2,898,843	-		MIT1002_02598	0.28	+0.6
2,898,853	-		MIT1002_02598	0.29	-0.5
2,898,853	-		MIT1002_02598	0.29	-2.2
2,898,855	+		MIT1002_02598	0.29	-1.6
2,898,855	+		MIT1002_02598	0.29	-0.1
2,898,855	+		MIT1002_02598	0.29	-0.5
2,898,855	+		MIT1002_02598	0.29	-0.7
2,898,855	+		MIT1002_02598	0.29	+0.0
2,898,855	+		MIT1002_02598	0.29	+0.9
2,898,855	+		MIT1002_02598	0.29	-0.6
2,898,855	+		MIT1002_02598	0.29	-2.1
2,898,855	+		MIT1002_02598	0.29	+0.6
2,898,855	+		MIT1002_02598	0.29	-1.5
2,898,863	-		MIT1002_02598	0.30	+0.9
2,898,863	-		MIT1002_02598	0.30	+1.0
2,898,863	-		MIT1002_02598	0.30	-0.1
2,898,863	-		MIT1002_02598	0.30	-0.8
2,898,863	-		MIT1002_02598	0.30	+0.0
2,898,863	-		MIT1002_02598	0.30	+0.9
2,898,863	-		MIT1002_02598	0.30	-0.4
2,898,863	-		MIT1002_02598	0.30	+0.8
2,898,863	-		MIT1002_02598	0.30	+0.0
2,898,863	-		MIT1002_02598	0.30	-1.9
2,898,863	-		MIT1002_02598	0.30	-0.6
2,898,863	-		MIT1002_02598	0.30	-0.3
2,898,863	-		MIT1002_02598	0.30	+0.4
2,898,863	-		MIT1002_02598	0.30	-1.4
2,898,863	-		MIT1002_02598	0.30	+0.2
2,898,863	-		MIT1002_02598	0.30	+1.6
2,898,863	-		MIT1002_02598	0.30	+2.2
2,898,863	-		MIT1002_02598	0.30	+1.7
2,898,927	-		MIT1002_02598	0.36	-0.6
2,898,950	+		MIT1002_02598	0.38	-0.2
2,898,950	+		MIT1002_02598	0.38	-2.2
2,898,958	-		MIT1002_02598	0.39	-0.5
2,898,960	+		MIT1002_02598	0.39	+2.0
2,898,960	+		MIT1002_02598	0.39	-0.5
2,898,960	+		MIT1002_02598	0.39	-1.1
2,898,965	+		MIT1002_02598	0.39	-0.3
2,898,965	+		MIT1002_02598	0.39	-0.8
2,898,989	+		MIT1002_02598	0.42	-0.6
2,899,055	+		MIT1002_02598	0.48	-0.1
2,899,085	-		MIT1002_02598	0.51	+0.2
2,899,086	+		MIT1002_02598	0.51	-0.2
2,899,086	+		MIT1002_02598	0.51	-1.2
2,899,094	-		MIT1002_02598	0.52	+0.6
2,899,100	+		MIT1002_02598	0.52	+0.1
2,899,100	+		MIT1002_02598	0.52	+0.3
2,899,100	+		MIT1002_02598	0.52	+0.1
2,899,108	-		MIT1002_02598	0.53	-1.7
2,899,202	+		MIT1002_02598	0.62	+1.7
2,899,208	-		MIT1002_02598	0.62	+1.5
2,899,208	-		MIT1002_02598	0.62	+1.2
2,899,212	+		MIT1002_02598	0.63	+0.6
2,899,220	-		MIT1002_02598	0.63	-0.9
2,899,224	+		MIT1002_02598	0.64	-1.8
2,899,261	-		MIT1002_02598	0.67	+1.6
2,899,277	-		MIT1002_02598	0.69	-0.8
2,899,369	+		MIT1002_02598	0.78	-1.2
2,899,370	+		MIT1002_02598	0.78	+2.7
2,899,435	-		MIT1002_02598	0.84	-0.5
2,899,435	-		MIT1002_02598	0.84	-1.2
2,899,544	+				+0.6
2,899,554	+				+2.6
2,899,668	+				+4.4
2,899,676	-				-0.4
2,899,728	-		MIT1002_02599	0.19	-0.5
2,899,735	+		MIT1002_02599	0.20	-0.5
2,899,754	+		MIT1002_02599	0.25	+1.7
2,899,762	-		MIT1002_02599	0.27	-0.9
2,899,830	+		MIT1002_02599	0.44	-0.1
2,899,830	+		MIT1002_02599	0.44	-0.5
2,899,919	+		MIT1002_02599	0.66	-0.5
2,899,961	+		MIT1002_02599	0.77	-1.5
2,899,998	+		MIT1002_02599	0.86	-0.2
2,900,120	-				+0.8
2,900,148	+				-0.2
2,900,297	+				+0.4
2,900,310	-				-1.6
2,900,341	+				+0.2
2,900,349	-				-1.6
2,900,349	-				-1.9
2,900,349	-				-1.4
2,900,388	+				-0.5
2,900,479	+		MIT1002_02600	0.15	+1.7
2,900,592	-		MIT1002_02600	0.32	+0.9
2,900,592	-		MIT1002_02600	0.32	-0.2