Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02518

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
2,807,399	-		MIT1002_02517	0.38	-1.5
2,807,436	-		MIT1002_02517	0.40	-0.2
2,807,534	+		MIT1002_02517	0.48	+0.8
2,807,542	+		MIT1002_02517	0.49	+1.6
2,807,542	+		MIT1002_02517	0.49	-2.5
2,807,550	-		MIT1002_02517	0.50	-0.2
2,807,703	-		MIT1002_02517	0.62	+0.4
2,807,725	+		MIT1002_02517	0.63	+0.6
2,807,733	-		MIT1002_02517	0.64	+0.5
2,807,734	+		MIT1002_02517	0.64	+0.3
2,807,742	-		MIT1002_02517	0.65	-0.7
2,807,764	-		MIT1002_02517	0.67	+0.3
2,807,770	+		MIT1002_02517	0.67	-0.3
2,807,796	-		MIT1002_02517	0.69	-1.3
2,807,798	+		MIT1002_02517	0.69	+0.7
2,807,805	+		MIT1002_02517	0.70	+0.3
2,807,806	-		MIT1002_02517	0.70	+1.3
2,807,813	-		MIT1002_02517	0.70	-1.1
2,807,815	+		MIT1002_02517	0.71	+0.7
2,807,818	-		MIT1002_02517	0.71	-0.5
2,807,880	+		MIT1002_02517	0.76	-0.2
2,807,898	-		MIT1002_02517	0.77	-0.2
2,808,069	-				+0.2
2,808,191	+				+0.3
2,808,199	-				-0.2
2,808,367	-				+0.6
2,808,424	+				+0.9
2,808,439	+				+1.1
2,808,439	+				-0.5
2,808,439	+				-0.6
2,808,439	+				+0.7
2,808,447	-				+1.9
2,808,447	-				+2.5
2,808,447	-				+0.5
2,808,494	+				-1.7
2,808,494	-				-0.5
2,808,528	+		MIT1002_02518	0.10	-1.0
2,808,536	-		MIT1002_02518	0.11	+0.5
2,808,537	+		MIT1002_02518	0.11	-0.9
2,808,545	-		MIT1002_02518	0.11	-1.0
2,808,575	+		MIT1002_02518	0.13	-0.4
2,808,610	+		MIT1002_02518	0.15	-1.7
2,808,635	+		MIT1002_02518	0.17	-0.6
2,808,665	-		MIT1002_02518	0.19	-0.1
2,808,713	+		MIT1002_02518	0.22	-0.9
2,808,721	-		MIT1002_02518	0.22	-1.2
2,808,763	+		MIT1002_02518	0.25	-1.8
2,808,763	+		MIT1002_02518	0.25	-0.5
2,808,780	+		MIT1002_02518	0.26	-0.5
2,808,836	+		MIT1002_02518	0.29	-0.9
2,808,869	+		MIT1002_02518	0.31	-0.5
2,808,896	+		MIT1002_02518	0.33	-0.6
2,808,902	-		MIT1002_02518	0.33	-0.4
2,808,909	-		MIT1002_02518	0.34	-0.4
2,808,909	-		MIT1002_02518	0.34	-0.6
2,808,937	+		MIT1002_02518	0.35	-1.4
2,808,937	+		MIT1002_02518	0.35	-1.0
2,808,945	-		MIT1002_02518	0.36	+1.0
2,808,945	-		MIT1002_02518	0.36	+0.1
2,808,999	+		MIT1002_02518	0.39	-0.5
2,808,999	+		MIT1002_02518	0.39	-2.4
2,808,999	+		MIT1002_02518	0.39	-0.5
2,809,007	-		MIT1002_02518	0.40	-0.0
2,809,007	-		MIT1002_02518	0.40	-1.8
2,809,009	+		MIT1002_02518	0.40	+1.0
2,809,086	+		MIT1002_02518	0.45	+0.1
2,809,086	+		MIT1002_02518	0.45	+2.1
2,809,163	+		MIT1002_02518	0.49	+0.8
2,809,219	-		MIT1002_02518	0.53	+12.5
2,809,332	-		MIT1002_02518	0.60	-0.9
2,809,363	+		MIT1002_02518	0.62	-0.4
2,809,413	+		MIT1002_02518	0.65	+0.8
2,809,413	+		MIT1002_02518	0.65	+0.5
2,809,430	+		MIT1002_02518	0.66	-0.7
2,809,430	+		MIT1002_02518	0.66	+1.2
2,809,430	+		MIT1002_02518	0.66	-0.3
2,809,430	+		MIT1002_02518	0.66	-0.9
2,809,430	+		MIT1002_02518	0.66	+1.5
2,809,430	+		MIT1002_02518	0.66	-1.1
2,809,438	-		MIT1002_02518	0.66	-0.1
2,809,438	-		MIT1002_02518	0.66	-0.2
2,809,438	-		MIT1002_02518	0.66	+0.2
2,809,438	-		MIT1002_02518	0.66	+0.8
2,809,440	+		MIT1002_02518	0.67	+1.6
2,809,496	+		MIT1002_02518	0.70	+0.8
2,809,506	+		MIT1002_02518	0.71	+0.3
2,809,506	+		MIT1002_02518	0.71	+0.2
2,809,506	+		MIT1002_02518	0.71	-0.9
2,809,506	+		MIT1002_02518	0.71	-0.2
2,809,506	+		MIT1002_02518	0.71	+1.6
2,809,506	+		MIT1002_02518	0.71	+0.0
2,809,506	+		MIT1002_02518	0.71	-0.1
2,809,514	-		MIT1002_02518	0.71	-0.7
2,809,514	-		MIT1002_02518	0.71	-0.5
2,809,514	-		MIT1002_02518	0.71	-1.7
2,809,514	-		MIT1002_02518	0.71	+1.1
2,809,514	-		MIT1002_02518	0.71	-0.5
2,809,514	-		MIT1002_02518	0.71	+1.7
2,809,514	-		MIT1002_02518	0.71	-0.2
2,809,519	-		MIT1002_02518	0.71	+0.2
2,809,519	-		MIT1002_02518	0.71	-1.0
2,809,524	-		MIT1002_02518	0.72	-1.0
2,809,529	-		MIT1002_02518	0.72	+1.0
2,809,560	+		MIT1002_02518	0.74	-0.4
2,809,560	+		MIT1002_02518	0.74	+1.4
2,809,560	+		MIT1002_02518	0.74	-0.7
2,809,560	+		MIT1002_02518	0.74	-0.6
2,809,563	-		MIT1002_02518	0.74	-0.1
2,809,563	-		MIT1002_02518	0.74	-1.9
2,809,563	-		MIT1002_02518	0.74	+0.1
2,809,565	+		MIT1002_02518	0.74	+0.9
2,809,568	-		MIT1002_02518	0.74	-1.1
2,809,583	-		MIT1002_02518	0.75	-1.9
2,809,590	+		MIT1002_02518	0.76	-1.4
2,809,592	+		MIT1002_02518	0.76	+1.8
2,809,592	+		MIT1002_02518	0.76	+0.2
2,809,592	+		MIT1002_02518	0.76	-0.5
2,809,592	+		MIT1002_02518	0.76	+2.0
2,809,592	+		MIT1002_02518	0.76	-0.3
2,809,600	-		MIT1002_02518	0.76	+0.6
2,809,632	+		MIT1002_02518	0.78	-0.3
2,809,665	+		MIT1002_02518	0.80	-0.5
2,809,673	-		MIT1002_02518	0.81	-0.4
2,809,708	-		MIT1002_02518	0.83	+1.1
2,809,741	-		MIT1002_02518	0.85	-2.0
2,809,782	-		MIT1002_02518	0.88	-1.2
2,809,916	-				-0.6
2,810,058	+				+0.0
2,810,117	+				+1.1
2,810,125	-				+1.9
2,810,168	+				+0.2
2,810,206	+		MIT1002_02519	0.13	+0.6
2,810,226	-		MIT1002_02519	0.16	-0.9
2,810,305	-		MIT1002_02519	0.30	-0.9
2,810,344	+		MIT1002_02519	0.37	-0.8
2,810,344	+		MIT1002_02519	0.37	+0.3
2,810,352	-		MIT1002_02519	0.38	-0.7
2,810,352	-		MIT1002_02519	0.38	-2.8
2,810,436	+		MIT1002_02519	0.52	+0.6
2,810,486	-		MIT1002_02519	0.61	-0.2
2,810,546	-		MIT1002_02519	0.71	-1.7
2,810,605	-		MIT1002_02519	0.81	-1.2
2,810,661	-				+0.3
2,810,760	-				-0.2
2,810,760	-				-0.2
2,810,902	+				-1.0
2,810,915	+				+0.6
2,810,935	-				-1.4
2,810,976	+				-0.2