Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01940

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
2,152,368	-		MIT1002_01938	0.86	-1.1
2,152,418	+				-0.1
2,152,510	-				-0.5
2,152,526	-				-1.5
2,152,540	+				-0.5
2,152,540	+				+0.9
2,152,540	+				+1.2
2,152,540	+				+0.6
2,152,540	+				+0.9
2,152,540	+				-1.1
2,152,548	-				-0.1
2,152,548	-				-0.4
2,152,586	+				-0.7
2,152,588	+				-1.2
2,152,588	+				+0.3
2,152,596	-				-0.9
2,152,596	-				+0.1
2,152,596	-				-0.7
2,152,596	-				+0.9
2,152,690	+		MIT1002_01939	0.17	+0.4
2,152,780	+		MIT1002_01939	0.35	+0.1
2,152,781	-		MIT1002_01939	0.36	+0.2
2,152,781	-		MIT1002_01939	0.36	-0.3
2,152,889	-		MIT1002_01939	0.57	-3.0
2,152,913	-		MIT1002_01939	0.62	-0.2
2,152,937	+		MIT1002_01939	0.66	-0.4
2,152,959	-		MIT1002_01939	0.71	-0.9
2,152,966	+		MIT1002_01939	0.72	-2.7
2,152,966	+		MIT1002_01939	0.72	+1.7
2,152,966	+		MIT1002_01939	0.72	-2.3
2,152,966	+		MIT1002_01939	0.72	+1.4
2,152,974	-		MIT1002_01939	0.74	+0.5
2,153,026	+		MIT1002_01939	0.84	+1.1
2,153,031	+		MIT1002_01939	0.85	-1.2
2,153,034	-		MIT1002_01939	0.86	+0.9
2,153,114	+				-0.9
2,153,122	-				+0.3
2,153,135	+				-0.5
2,153,135	+				+0.5
2,153,143	-				+1.1
2,153,145	+				-0.4
2,153,153	-				-1.3
2,153,202	-				+0.8
2,153,234	+				-0.8
2,153,367	+				+0.8
2,153,483	+		MIT1002_01940	0.13	+1.0
2,153,488	+		MIT1002_01940	0.13	+3.1
2,153,488	+		MIT1002_01940	0.13	+0.0
2,153,491	-		MIT1002_01940	0.13	+0.0
2,153,491	-		MIT1002_01940	0.13	+0.9
2,153,491	-		MIT1002_01940	0.13	-1.0
2,153,507	-		MIT1002_01940	0.14	+1.1
2,153,627	+		MIT1002_01940	0.22	+0.9
2,153,629	+		MIT1002_01940	0.23	+0.7
2,153,645	+		MIT1002_01940	0.24	+0.7
2,153,661	+		MIT1002_01940	0.25	+0.9
2,153,666	+		MIT1002_01940	0.25	+1.1
2,153,666	+		MIT1002_01940	0.25	+1.7
2,153,674	-		MIT1002_01940	0.26	+1.1
2,153,674	-		MIT1002_01940	0.26	+0.2
2,153,707	-		MIT1002_01940	0.28	+1.4
2,153,718	-		MIT1002_01940	0.29	-1.5
2,153,732	-		MIT1002_01940	0.30	-0.3
2,153,778	+		MIT1002_01940	0.33	+2.1
2,153,836	-		MIT1002_01940	0.37	+1.9
2,154,158	+		MIT1002_01940	0.59	+0.7
2,154,206	+		MIT1002_01940	0.62	-1.7
2,154,296	-		MIT1002_01940	0.68	-0.3
2,154,312	-		MIT1002_01940	0.69	+0.7
2,154,315	+		MIT1002_01940	0.69	+1.1
2,154,356	+		MIT1002_01940	0.72	+2.7
2,154,416	+		MIT1002_01940	0.76	+1.1
2,154,551	+		MIT1002_01940	0.86	+1.8
2,154,551	+		MIT1002_01940	0.86	+2.1
2,154,581	+		MIT1002_01940	0.88	+0.9
2,154,611	+		MIT1002_01940	0.90	+1.2
2,154,625	-				+2.7
2,154,633	-				+0.0
2,154,723	+				+0.2
2,154,744	-				+0.6
2,154,791	-				-1.0