Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01682

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,866,177	-		MIT1002_01681	0.76	+0.4
1,866,177	-		MIT1002_01681	0.76	-0.3
1,866,177	-		MIT1002_01681	0.76	+1.4
1,866,187	+		MIT1002_01681	0.76	-1.8
1,866,187	+		MIT1002_01681	0.76	+0.2
1,866,202	+		MIT1002_01681	0.77	+2.5
1,866,210	-		MIT1002_01681	0.77	-1.8
1,866,211	+		MIT1002_01681	0.77	-0.1
1,866,218	+		MIT1002_01681	0.77	-1.5
1,866,226	-		MIT1002_01681	0.78	+0.2
1,866,315	+		MIT1002_01681	0.81	-0.9
1,866,322	-		MIT1002_01681	0.81	-0.6
1,866,342	+		MIT1002_01681	0.82	-1.4
1,866,447	+		MIT1002_01681	0.86	+0.7
1,866,520	-		MIT1002_01681	0.88	-3.0
1,866,520	-		MIT1002_01681	0.88	-0.6
1,866,520	-		MIT1002_01681	0.88	-0.3
1,866,522	-		MIT1002_01681	0.89	-0.1
1,866,564	+				+1.6
1,866,600	+				-2.1
1,866,616	-				+0.8
1,866,646	-				-1.7
1,866,661	+				-0.3
1,866,690	+				-0.6
1,866,698	-				-0.1
1,866,709	+				+1.3
1,866,714	-				+0.1
1,866,714	-				-0.2
1,866,716	+				+1.7
1,866,716	+				+2.1
1,866,767	-				+0.6
1,866,863	-				-1.4
1,866,890	+				+1.4
1,867,046	+				-1.2
1,867,208	-				+1.3
1,867,215	-				+0.7
1,867,215	-				-0.1
1,867,242	+				+0.2
1,867,354	-		MIT1002_01682	0.19	-0.3
1,867,445	-		MIT1002_01682	0.29	+1.0
1,867,483	-		MIT1002_01682	0.33	+0.5
1,867,505	+		MIT1002_01682	0.35	+0.1
1,867,539	+		MIT1002_01682	0.39	-1.9
1,867,539	+		MIT1002_01682	0.39	+0.3
1,867,539	+		MIT1002_01682	0.39	-0.1
1,867,552	+		MIT1002_01682	0.40	-1.3
1,867,595	+		MIT1002_01682	0.45	-0.8
1,867,629	+		MIT1002_01682	0.48	-1.4
1,867,636	+		MIT1002_01682	0.49	+0.7
1,867,807	+		MIT1002_01682	0.67	-0.7
1,867,819	+		MIT1002_01682	0.68	-0.6
1,867,826	+		MIT1002_01682	0.69	-2.3
1,867,875	+		MIT1002_01682	0.74	-1.7
1,867,942	-		MIT1002_01682	0.81	-1.5
1,867,942	-		MIT1002_01682	0.81	-0.1
1,867,971	-		MIT1002_01682	0.84	-0.2
1,867,971	-		MIT1002_01682	0.84	-1.1
1,868,005	+		MIT1002_01682	0.88	-1.3
1,868,047	+				-1.4
1,868,055	+				-0.6
1,868,067	+				-1.0
1,868,067	+				+0.7
1,868,067	+				-1.2
1,868,067	+				-1.7
1,868,075	-				+0.0
1,868,075	-				-1.5
1,868,075	-				-0.7
1,868,075	-				-0.9
1,868,090	-				+0.3
1,868,098	+				+2.3
1,868,111	-				-0.2
1,868,210	+				-0.4
1,868,218	-				+0.1
1,868,218	-				+0.4
1,868,226	+				-1.0
1,868,281	-				-1.6
1,868,355	+		MIT1002_01683	0.12	+0.9
1,868,363	-		MIT1002_01683	0.12	+0.5
1,868,378	-		MIT1002_01683	0.13	-2.3
1,868,380	+		MIT1002_01683	0.14	-0.9
1,868,483	-		MIT1002_01683	0.22	-0.5
1,868,488	+		MIT1002_01683	0.22	-0.8
1,868,546	+		MIT1002_01683	0.27	-0.1
1,868,564	-		MIT1002_01683	0.28	+0.7
1,868,573	+		MIT1002_01683	0.29	+0.2
1,868,581	-		MIT1002_01683	0.29	+0.2
1,868,583	-		MIT1002_01683	0.30	-1.6
1,868,703	+		MIT1002_01683	0.39	+2.6
1,868,737	-		MIT1002_01683	0.42	+0.4
1,868,751	+		MIT1002_01683	0.43	+1.3
1,868,756	+		MIT1002_01683	0.43	+0.2
1,868,759	-		MIT1002_01683	0.43	-0.2
1,868,825	+		MIT1002_01683	0.49	+0.3
1,868,826	-		MIT1002_01683	0.49	-0.8
1,868,832	+		MIT1002_01683	0.49	-0.3
1,868,840	-		MIT1002_01683	0.50	+0.8
1,868,840	-		MIT1002_01683	0.50	+1.8
1,868,877	+		MIT1002_01683	0.53	+1.0
1,868,982	-		MIT1002_01683	0.61	-1.9
1,869,044	+		MIT1002_01683	0.66	+1.7
1,869,052	-		MIT1002_01683	0.66	+2.3
1,869,072	+		MIT1002_01683	0.68	-3.0
1,869,107	+		MIT1002_01683	0.71	+1.7