Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01644

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,814,643	-				+0.6
1,814,675	+		MIT1002_01643	0.12	+0.1
1,814,694	+		MIT1002_01643	0.14	-2.8
1,814,695	+		MIT1002_01643	0.14	+0.4
1,814,695	-		MIT1002_01643	0.14	-1.1
1,814,738	+		MIT1002_01643	0.18	-0.6
1,814,812	+		MIT1002_01643	0.25	+0.8
1,814,988	-		MIT1002_01643	0.43	+1.1
1,815,044	+		MIT1002_01643	0.48	+2.7
1,815,054	+		MIT1002_01643	0.49	+0.9
1,815,067	-		MIT1002_01643	0.50	+1.0
1,815,089	-		MIT1002_01643	0.52	+0.3
1,815,127	+		MIT1002_01643	0.56	-2.1
1,815,127	+		MIT1002_01643	0.56	-0.0
1,815,275	-		MIT1002_01643	0.71	+0.1
1,815,324	-		MIT1002_01643	0.75	+1.2
1,815,332	+		MIT1002_01643	0.76	-1.7
1,815,355	-		MIT1002_01643	0.78	-2.1
1,815,365	-		MIT1002_01643	0.79	-1.5
1,815,406	+		MIT1002_01643	0.83	-0.9
1,815,412	+		MIT1002_01643	0.84	-1.8
1,815,419	-		MIT1002_01643	0.85	+0.5
1,815,427	+		MIT1002_01643	0.85	-1.2
1,815,442	+		MIT1002_01643	0.87	-0.8
1,815,442	+		MIT1002_01643	0.87	-1.3
1,815,450	-		MIT1002_01643	0.88	-0.4
1,815,541	+				+1.1
1,815,671	+				+0.5
1,815,717	+		MIT1002_01644	0.18	-1.6
1,815,725	-		MIT1002_01644	0.20	-1.5
1,815,735	-		MIT1002_01644	0.22	-1.4
1,815,867	+		MIT1002_01644	0.47	-1.5
1,815,875	-		MIT1002_01644	0.49	+0.2
1,815,896	+		MIT1002_01644	0.53	-1.7
1,815,906	+		MIT1002_01644	0.55	-3.0
1,815,914	-		MIT1002_01644	0.57	-1.1
1,816,042	+		MIT1002_01644	0.81	+0.4
1,816,050	-		MIT1002_01644	0.83	+0.6
1,816,050	-		MIT1002_01644	0.83	+0.7
1,816,100	+				+0.4
1,816,116	-				-1.8
1,816,211	-				-2.2
1,816,231	+				-2.2
1,816,266	+				+0.1
1,816,307	+				-0.7
1,816,315	-				+0.9
1,816,368	+				-0.7
1,816,371	-				-0.9
1,816,562	+		MIT1002_01645	0.20	-0.0
1,816,617	-		MIT1002_01645	0.23	+1.7
1,816,683	+		MIT1002_01645	0.26	+0.3
1,816,691	-		MIT1002_01645	0.27	+1.2
1,816,739	+		MIT1002_01645	0.30	-0.1
1,816,908	+		MIT1002_01645	0.39	-1.1
1,816,908	+		MIT1002_01645	0.39	-0.7
1,816,916	-		MIT1002_01645	0.40	-0.9
1,816,916	-		MIT1002_01645	0.40	+0.4
1,816,916	-		MIT1002_01645	0.40	+0.3
1,816,929	+		MIT1002_01645	0.41	-0.9
1,816,929	+		MIT1002_01645	0.41	+0.6
1,817,035	+		MIT1002_01645	0.47	+1.5