Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01389

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,539,667	+				-0.2
1,539,667	+				+0.3
1,539,677	+				-0.6
1,539,677	+				-1.0
1,539,677	+				-0.7
1,539,677	+				-0.3
1,539,685	-				+1.0
1,539,685	-				+1.0
1,539,685	-				-1.0
1,539,685	-				-0.7
1,539,703	-				-2.0
1,539,864	-		MIT1002_01388	0.25	-0.3
1,539,941	+		MIT1002_01388	0.33	-1.2
1,539,944	+		MIT1002_01388	0.33	-0.5
1,540,094	-		MIT1002_01388	0.48	+1.9
1,540,094	-		MIT1002_01388	0.48	-0.5
1,540,094	-		MIT1002_01388	0.48	+0.6
1,540,226	-		MIT1002_01388	0.61	-0.1
1,540,275	+		MIT1002_01388	0.66	-0.2
1,540,275	+		MIT1002_01388	0.66	+0.4
1,540,277	+		MIT1002_01388	0.66	+1.0
1,540,277	+		MIT1002_01388	0.66	-1.8
1,540,277	-		MIT1002_01388	0.66	+1.9
1,540,283	-		MIT1002_01388	0.67	-2.1
1,540,283	-		MIT1002_01388	0.67	+0.8
1,540,283	-		MIT1002_01388	0.67	-0.5
1,540,283	-		MIT1002_01388	0.67	+2.1
1,540,285	-		MIT1002_01388	0.67	-2.9
1,540,285	-		MIT1002_01388	0.67	+1.9
1,540,285	-		MIT1002_01388	0.67	+0.3
1,540,285	-		MIT1002_01388	0.67	+1.2
1,540,317	-		MIT1002_01388	0.70	+2.8
1,540,422	-		MIT1002_01388	0.81	+1.0
1,540,422	-		MIT1002_01388	0.81	-2.5
1,540,427	+		MIT1002_01388	0.81	+0.1
1,540,427	+		MIT1002_01388	0.81	-0.5
1,540,437	+		MIT1002_01388	0.82	-0.1
1,540,491	+		MIT1002_01388	0.88	+1.6
1,540,510	-		MIT1002_01388	0.89	-0.9
1,540,515	-				-0.6
1,540,531	+				+0.8
1,540,568	-				+0.0
1,540,571	+				+1.1
1,540,571	+				+0.8
1,540,579	-				+2.0
1,540,621	+				-1.0
1,540,629	+				+0.1
1,540,629	-				-0.2
1,540,637	-				+0.8
1,540,755	+		MIT1002_01389	0.20	+0.6
1,540,755	+		MIT1002_01389	0.20	+0.8
1,540,755	+		MIT1002_01389	0.20	+1.2
1,540,763	-		MIT1002_01389	0.21	-0.4
1,540,763	-		MIT1002_01389	0.21	-0.2
1,540,763	-		MIT1002_01389	0.21	+0.2
1,540,794	-		MIT1002_01389	0.25	+0.2
1,540,811	-		MIT1002_01389	0.28	-0.9
1,540,818	+		MIT1002_01389	0.29	+0.7
1,540,852	-		MIT1002_01389	0.33	+0.1
1,540,865	+		MIT1002_01389	0.35	-0.8
1,540,873	-		MIT1002_01389	0.36	+1.0
1,540,894	+		MIT1002_01389	0.40	-0.1
1,540,975	+		MIT1002_01389	0.51	+13.1
1,540,983	-		MIT1002_01389	0.52	-0.7
1,540,983	-		MIT1002_01389	0.52	+1.1
1,541,040	-		MIT1002_01389	0.60	-1.1
1,541,169	+		MIT1002_01389	0.79	-0.6
1,541,169	+		MIT1002_01389	0.79	-1.6
1,541,171	+		MIT1002_01389	0.79	+0.5
1,541,177	-		MIT1002_01389	0.80	-0.5
1,541,250	+				+1.1
1,541,279	-				-0.6
1,541,288	-				-0.2
1,541,330	+				+0.2
1,541,363	+				-0.4
1,541,398	-		MIT1002_01390	0.13	+2.5
1,541,399	+		MIT1002_01390	0.13	-0.5
1,541,430	+		MIT1002_01390	0.18	-0.3
1,541,441	+		MIT1002_01390	0.19	+0.5
1,541,441	+		MIT1002_01390	0.19	-1.5
1,541,441	+		MIT1002_01390	0.19	-0.3
1,541,441	+		MIT1002_01390	0.19	+1.2
1,541,449	-		MIT1002_01390	0.21	-1.5
1,541,467	+		MIT1002_01390	0.23	-0.6
1,541,516	-		MIT1002_01390	0.31	-0.7
1,541,516	-		MIT1002_01390	0.31	-2.2
1,541,551	+		MIT1002_01390	0.36	-1.2
1,541,551	+		MIT1002_01390	0.36	-0.6
1,541,551	+		MIT1002_01390	0.36	-0.9
1,541,551	+		MIT1002_01390	0.36	-0.1
1,541,557	+		MIT1002_01390	0.37	+0.3
1,541,596	+		MIT1002_01390	0.43	-0.3
1,541,632	+		MIT1002_01390	0.48	-0.9
1,541,640	-		MIT1002_01390	0.50	-0.2
1,541,684	+		MIT1002_01390	0.56	-0.4
1,541,684	+		MIT1002_01390	0.56	+2.5
1,541,709	-		MIT1002_01390	0.60	-0.5
1,541,711	+		MIT1002_01390	0.60	+1.3
1,541,711	+		MIT1002_01390	0.60	+3.3
1,541,735	+		MIT1002_01390	0.64	-0.4
1,541,832	-		MIT1002_01390	0.79	+1.4
1,541,885	+		MIT1002_01390	0.87	+0.5
1,541,932	-				+0.1
1,541,948	-				+1.4
1,541,992	+				+2.2
1,541,992	+				-2.2
1,542,002	+				+0.8
1,542,002	-				-0.6
1,542,015	-				-0.3
1,542,051	-				-1.8
1,542,115	-		MIT1002_01391	0.11	-1.0
1,542,178	+		MIT1002_01391	0.15	+0.4
1,542,214	+		MIT1002_01391	0.18	-0.3
1,542,256	+		MIT1002_01391	0.21	-1.3
1,542,256	+		MIT1002_01391	0.21	+0.6
1,542,256	+		MIT1002_01391	0.21	+2.3
1,542,256	-		MIT1002_01391	0.21	-0.5