Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01377

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,527,234	-				+1.6
1,527,234	-				-0.2
1,527,250	+				-0.2
1,527,297	-				-0.1
1,527,373	+				+0.8
1,527,373	+				-1.1
1,527,373	+				-0.5
1,527,381	-				+1.4
1,527,400	-				+1.1
1,527,509	-				+1.8
1,527,667	-		MIT1002_01376	0.66	+0.2
1,527,685	+		MIT1002_01376	0.72	-0.1
1,527,857	+				-0.5
1,527,857	+				+0.0
1,527,859	+				-1.0
1,527,918	+				-0.6
1,527,918	+				+0.1
1,527,936	-				-0.9
1,527,946	-				+0.3
1,527,985	-				-0.6
1,528,066	-				+1.1
1,528,099	-				+1.7
1,528,154	-				+0.5
1,528,154	-				-1.1
1,528,167	-				+1.0
1,528,217	+				-2.3
1,528,262	-				-1.1
1,528,356	+		MIT1002_01377	0.24	-1.6
1,528,374	-		MIT1002_01377	0.27	-0.7
1,528,374	-		MIT1002_01377	0.27	-1.3
1,528,448	+		MIT1002_01377	0.41	-0.5
1,528,488	-		MIT1002_01377	0.49	-0.1
1,528,488	-		MIT1002_01377	0.49	-0.8
1,528,505	+		MIT1002_01377	0.52	+0.1
1,528,562	+		MIT1002_01377	0.63	+0.9
1,528,582	-		MIT1002_01377	0.67	-0.7
1,528,755	-				-1.6
1,528,755	-				-1.1
1,528,830	-				-0.1
1,528,839	+				+0.5
1,528,846	+				+2.1
1,528,847	-				+0.3
1,528,873	+				-0.2
1,528,970	+				-2.8
1,529,029	-				-0.5
1,529,077	+		MIT1002_01378	0.11	-1.8
1,529,114	+		MIT1002_01378	0.14	+1.1
1,529,115	-		MIT1002_01378	0.14	-1.3
1,529,120	+		MIT1002_01378	0.15	-1.3
1,529,128	-		MIT1002_01378	0.15	-0.8
1,529,247	+		MIT1002_01378	0.24	-0.6
1,529,247	+		MIT1002_01378	0.24	-1.6
1,529,247	+		MIT1002_01378	0.24	-1.0
1,529,250	-		MIT1002_01378	0.24	+0.1
1,529,255	-		MIT1002_01378	0.25	-4.7
1,529,255	-		MIT1002_01378	0.25	-4.3
1,529,267	+		MIT1002_01378	0.26	-2.4
1,529,275	-		MIT1002_01378	0.26	-0.6
1,529,297	+		MIT1002_01378	0.28	-2.5
1,529,317	-		MIT1002_01378	0.29	-2.4
1,529,324	+		MIT1002_01378	0.30	-1.2
1,529,324	+		MIT1002_01378	0.30	+1.1
1,529,329	+		MIT1002_01378	0.30	-1.6
1,529,338	+		MIT1002_01378	0.31	-1.8
1,529,356	-		MIT1002_01378	0.32	-1.6
1,529,356	-		MIT1002_01378	0.32	-0.6
1,529,395	+		MIT1002_01378	0.35	-1.9
1,529,424	+		MIT1002_01378	0.38	-2.0
1,529,424	+		MIT1002_01378	0.38	+0.1
1,529,439	+		MIT1002_01378	0.39	-2.1
1,529,439	+		MIT1002_01378	0.39	-2.0
1,529,447	-		MIT1002_01378	0.39	-1.4
1,529,447	-		MIT1002_01378	0.39	-2.2
1,529,495	+		MIT1002_01378	0.43	-1.4
1,529,540	+		MIT1002_01378	0.46	-2.2
1,529,555	-		MIT1002_01378	0.47	-1.4
1,529,561	-		MIT1002_01378	0.48	-3.6
1,529,594	-		MIT1002_01378	0.50	-1.8
1,529,735	+		MIT1002_01378	0.61	-2.9