Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01251 and MIT1002_01252 are separated by 34 nucleotides MIT1002_01252 and MIT1002_01253 are separated by 1 nucleotides MIT1002_01253 and MIT1002_01254 overlap by 1 nucleotides
MIT1002_01251: MIT1002_01251 - Endonuclease III, at 1,377,446 to 1,378,168
_01251
MIT1002_01252: MIT1002_01252 - Electron transport complex protein RnfE, at 1,378,203 to 1,378,895
_01252
MIT1002_01253: MIT1002_01253 - Nitrogen fixation protein RnfG, at 1,378,897 to 1,379,781
_01253
MIT1002_01254: MIT1002_01254 - Nitrogen fixation protein RnfD, at 1,379,781 to 1,380,863
_01254
Position (kb) 1378
1379
1380 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1377.930 kb on + strand, within MIT1002_01251 at 1377.940 kb on + strand, within MIT1002_01251 at 1378.003 kb on + strand, within MIT1002_01251 at 1378.003 kb on + strand, within MIT1002_01251 at 1378.003 kb on + strand, within MIT1002_01251 at 1378.003 kb on + strand, within MIT1002_01251 at 1378.003 kb on + strand, within MIT1002_01251 at 1378.005 kb on + strand, within MIT1002_01251 at 1378.011 kb on - strand, within MIT1002_01251 at 1378.011 kb on - strand, within MIT1002_01251 at 1378.011 kb on - strand, within MIT1002_01251 at 1378.011 kb on - strand, within MIT1002_01251 at 1378.013 kb on - strand, within MIT1002_01251 at 1378.918 kb on - strand at 1378.986 kb on - strand, within MIT1002_01253 at 1378.986 kb on - strand, within MIT1002_01253 at 1378.986 kb on - strand, within MIT1002_01253 at 1378.986 kb on - strand, within MIT1002_01253 at 1378.988 kb on - strand, within MIT1002_01253
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 1,377,930 + MIT1002_01251 0.67 +1.4 1,377,940 + MIT1002_01251 0.68 +0.9 1,378,003 + MIT1002_01251 0.77 +0.9 1,378,003 + MIT1002_01251 0.77 +0.4 1,378,003 + MIT1002_01251 0.77 -0.0 1,378,003 + MIT1002_01251 0.77 -0.9 1,378,003 + MIT1002_01251 0.77 +0.7 1,378,005 + MIT1002_01251 0.77 -0.6 1,378,011 - MIT1002_01251 0.78 -2.1 1,378,011 - MIT1002_01251 0.78 -0.4 1,378,011 - MIT1002_01251 0.78 -0.1 1,378,011 - MIT1002_01251 0.78 -0.7 1,378,013 - MIT1002_01251 0.78 -0.2 1,378,918 - +0.5 1,378,986 - MIT1002_01253 0.10 +1.1 1,378,986 - MIT1002_01253 0.10 -1.2 1,378,986 - MIT1002_01253 0.10 -2.8 1,378,986 - MIT1002_01253 0.10 +0.5 1,378,988 - MIT1002_01253 0.10 -0.5
Or see this region's nucleotide sequence