Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01173

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,288,808	-		MIT1002_01172	0.54	+1.2
1,288,830	-		MIT1002_01172	0.55	+0.4
1,288,908	+		MIT1002_01172	0.59	-0.4
1,288,938	-		MIT1002_01172	0.61	-0.7
1,288,940	-		MIT1002_01172	0.61	-0.5
1,288,992	+		MIT1002_01172	0.63	-0.5
1,288,996	+		MIT1002_01172	0.63	-0.6
1,288,996	+		MIT1002_01172	0.63	-0.1
1,289,004	-		MIT1002_01172	0.64	-0.2
1,289,004	-		MIT1002_01172	0.64	+0.3
1,289,004	-		MIT1002_01172	0.64	-0.2
1,289,041	+		MIT1002_01172	0.65	-1.6
1,289,114	-		MIT1002_01172	0.69	-2.0
1,289,130	+		MIT1002_01172	0.70	-0.7
1,289,133	-		MIT1002_01172	0.70	-2.1
1,289,215	+		MIT1002_01172	0.74	+0.2
1,289,223	-		MIT1002_01172	0.74	-0.2
1,289,379	+		MIT1002_01172	0.82	+0.6
1,289,379	+		MIT1002_01172	0.82	-1.7
1,289,379	-		MIT1002_01172	0.82	-0.9
1,289,387	-		MIT1002_01172	0.82	-2.1
1,289,388	-		MIT1002_01172	0.82	+0.7
1,289,398	+		MIT1002_01172	0.83	+0.8
1,289,398	+		MIT1002_01172	0.83	+1.4
1,289,398	+		MIT1002_01172	0.83	-0.6
1,289,400	+		MIT1002_01172	0.83	-0.6
1,289,406	-		MIT1002_01172	0.83	-0.0
1,289,406	-		MIT1002_01172	0.83	+0.6
1,289,406	-		MIT1002_01172	0.83	-0.5
1,289,406	-		MIT1002_01172	0.83	+1.4
1,289,450	+		MIT1002_01172	0.85	+0.7
1,289,450	+		MIT1002_01172	0.85	+0.6
1,289,450	+		MIT1002_01172	0.85	+0.3
1,289,458	-		MIT1002_01172	0.85	+0.7
1,289,458	-		MIT1002_01172	0.85	-0.3
1,289,458	-		MIT1002_01172	0.85	+1.4
1,289,469	+		MIT1002_01172	0.86	-0.9
1,289,538	+		MIT1002_01172	0.89	-0.4
1,289,541	-		MIT1002_01172	0.89	-0.5
1,289,541	-		MIT1002_01172	0.89	-0.3
1,289,546	-		MIT1002_01172	0.90	-1.2
1,289,547	-		MIT1002_01172	0.90	+3.1
1,289,554	+				-0.1
1,289,562	-				+0.6
1,289,562	-				+0.4
1,289,562	-				-1.7
1,289,562	-				+0.9
1,289,562	-				+0.2
1,289,571	-				-1.4
1,289,593	-				-0.5
1,289,593	-				-0.5
1,289,615	-				-1.2
1,289,683	-				+0.9
1,289,685	+				-1.3
1,289,685	+				+0.5
1,289,725	-				-0.7
1,289,827	+		MIT1002_01173	0.18	-1.2
1,289,899	-		MIT1002_01173	0.45	+0.1
1,289,908	+		MIT1002_01173	0.48	+0.9
1,289,908	+		MIT1002_01173	0.48	+2.7
1,289,908	+		MIT1002_01173	0.48	-1.0
1,289,908	+		MIT1002_01173	0.48	-1.5
1,289,908	+		MIT1002_01173	0.48	+0.2
1,289,915	+		MIT1002_01173	0.51	+1.8
1,289,916	-		MIT1002_01173	0.52	+0.2
1,289,916	-		MIT1002_01173	0.52	+1.4
1,289,916	-		MIT1002_01173	0.52	+1.6
1,289,916	-		MIT1002_01173	0.52	-0.4
1,290,099	-				+0.2
1,290,101	+				-1.1
1,290,166	-		MIT1002_01174	0.19	-2.0
1,290,233	-		MIT1002_01174	0.29	-0.3
1,290,280	-		MIT1002_01174	0.37	-3.1
1,290,301	-		MIT1002_01174	0.40	-1.4
1,290,332	-		MIT1002_01174	0.45	-0.5
1,290,334	+		MIT1002_01174	0.45	+1.2
1,290,343	+		MIT1002_01174	0.47	-1.2
1,290,351	-		MIT1002_01174	0.48	-1.0
1,290,385	-		MIT1002_01174	0.53	+2.2
1,290,395	-		MIT1002_01174	0.55	+0.5
1,290,408	+		MIT1002_01174	0.57	+0.9
1,290,408	+		MIT1002_01174	0.57	+0.3
1,290,416	-		MIT1002_01174	0.58	-1.9
1,290,416	-		MIT1002_01174	0.58	+0.8
1,290,416	-		MIT1002_01174	0.58	+0.0
1,290,467	+		MIT1002_01174	0.66	+0.7
1,290,536	+		MIT1002_01174	0.76	+0.1
1,290,585	-		MIT1002_01174	0.84	-0.7
1,290,628	-				+1.2
1,290,651	+				-1.1
1,290,697	-				-2.4
1,290,747	-		MIT1002_01175	0.11	-1.6
1,290,868	+		MIT1002_01175	0.26	-0.2
1,290,877	+		MIT1002_01175	0.27	-0.4
1,290,913	+		MIT1002_01175	0.31	-0.1
1,290,921	-		MIT1002_01175	0.32	-0.2
1,290,987	-		MIT1002_01175	0.40	+2.2
1,290,992	-		MIT1002_01175	0.40	+0.7
1,290,992	-		MIT1002_01175	0.40	-0.4
1,291,027	+		MIT1002_01175	0.44	+0.8
1,291,027	+		MIT1002_01175	0.44	-0.1
1,291,035	-		MIT1002_01175	0.45	-1.5