Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01085

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,191,714	-		MIT1002_01083	0.72	+0.5
1,191,719	+		MIT1002_01083	0.72	-0.4
1,191,749	-		MIT1002_01083	0.74	-0.7
1,191,897	-		MIT1002_01083	0.86	-0.9
1,191,897	-		MIT1002_01083	0.86	-1.0
1,191,924	+		MIT1002_01083	0.88	+1.6
1,191,938	-		MIT1002_01083	0.89	-1.0
1,191,938	-		MIT1002_01083	0.89	-0.0
1,191,938	-		MIT1002_01083	0.89	+0.2
1,191,948	-		MIT1002_01083	0.89	-0.9
1,191,953	-		MIT1002_01083	0.90	+0.8
1,191,972	+				-0.7
1,191,994	+				-0.8
1,192,002	-				+0.2
1,192,071	+				+0.3
1,192,079	-				-0.2
1,192,095	+				-0.6
1,192,271	+				+0.1
1,192,292	-				-0.5
1,192,292	-				+0.9
1,192,300	-				+0.6
1,192,326	-				-0.3
1,192,345	-				-0.1
1,192,350	+				-1.0
1,192,431	+		MIT1002_01084	0.29	-0.4
1,192,553	-		MIT1002_01084	0.66	-1.7
1,192,553	-		MIT1002_01084	0.66	-1.3
1,192,565	-		MIT1002_01084	0.69	-0.6
1,192,569	-		MIT1002_01084	0.71	-2.8
1,192,614	-		MIT1002_01084	0.84	+0.2
1,192,695	+				-1.4
1,192,696	+				-2.1
1,192,704	-				-1.4
1,192,711	-				-0.8
1,192,721	+				-3.4
1,192,729	-				-1.2
1,192,771	+				-1.9
1,192,771	+				+4.9
1,192,771	+				-0.6
1,192,798	+				-2.2
1,192,900	+		MIT1002_01085	0.13	-2.7
1,192,900	+		MIT1002_01085	0.13	-1.1
1,192,955	+		MIT1002_01085	0.16	-0.2
1,192,969	-		MIT1002_01085	0.17	-1.9
1,193,097	+		MIT1002_01085	0.25	-2.5
1,193,183	-		MIT1002_01085	0.30	-3.0
1,193,288	+		MIT1002_01085	0.36	-1.2
1,193,338	+		MIT1002_01085	0.39	+1.2
1,193,492	+		MIT1002_01085	0.48	-0.2
1,193,526	+		MIT1002_01085	0.50	+2.0
1,193,631	+		MIT1002_01085	0.56	-0.9
1,193,663	+		MIT1002_01085	0.58	+0.5
1,193,714	+		MIT1002_01085	0.61	-0.9
1,193,714	+		MIT1002_01085	0.61	-1.5
1,193,768	-		MIT1002_01085	0.64	-1.4
1,193,800	-		MIT1002_01085	0.66	-1.7
1,193,850	+		MIT1002_01085	0.69	-0.2
1,193,850	+		MIT1002_01085	0.69	-0.1
1,193,869	+		MIT1002_01085	0.70	-0.1
1,193,869	+		MIT1002_01085	0.70	-1.4
1,193,869	+		MIT1002_01085	0.70	-0.2
1,193,877	-		MIT1002_01085	0.71	-1.1
1,193,877	-		MIT1002_01085	0.71	-1.9
1,193,886	+		MIT1002_01085	0.71	-0.5
1,193,919	-		MIT1002_01085	0.73	-1.0
1,193,921	+		MIT1002_01085	0.73	+0.7
1,193,921	-		MIT1002_01085	0.73	-1.6
1,194,071	+		MIT1002_01085	0.82	+0.2
1,194,079	-		MIT1002_01085	0.83	+0.1
1,194,108	+		MIT1002_01085	0.84	-1.2
1,194,111	-		MIT1002_01085	0.84	-2.8
1,194,116	-		MIT1002_01085	0.85	-0.6
1,194,145	-		MIT1002_01085	0.86	-1.4
1,194,225	+				-0.6
1,194,262	+				+0.6
1,194,279	+				-1.4
1,194,317	-				-1.6
1,194,317	-				-1.9
1,194,350	+				+1.4
1,194,353	-				-2.8
1,194,353	-				-2.2
1,194,353	-				+0.0
1,194,363	-				-1.0
1,194,383	+				-1.8
1,194,391	-				-1.0
1,194,452	-				-2.0
1,194,483	+				+1.6
1,194,541	+		MIT1002_01086	0.15	-0.8
1,194,638	-		MIT1002_01086	0.24	-1.4
1,194,689	+		MIT1002_01086	0.29	-2.2
1,194,697	-		MIT1002_01086	0.30	-1.9
1,194,702	+		MIT1002_01086	0.30	-1.3
1,194,741	+		MIT1002_01086	0.34	-0.7
1,194,741	+		MIT1002_01086	0.34	-0.9
1,194,749	-		MIT1002_01086	0.35	-0.5
1,194,749	-		MIT1002_01086	0.35	+0.4
1,194,749	-		MIT1002_01086	0.35	-0.5
1,194,782	-		MIT1002_01086	0.38	+0.1
1,194,986	-		MIT1002_01086	0.58	+0.6
1,194,991	-		MIT1002_01086	0.58	-0.3
1,195,040	-		MIT1002_01086	0.63	-1.0
1,195,042	+		MIT1002_01086	0.63	-2.0
1,195,165	-		MIT1002_01086	0.75	-0.9
1,195,165	-		MIT1002_01086	0.75	-1.1
1,195,188	+		MIT1002_01086	0.77	-0.6
1,195,205	+		MIT1002_01086	0.79	-0.7
1,195,205	+		MIT1002_01086	0.79	-0.0
1,195,205	+		MIT1002_01086	0.79	-1.6
1,195,205	+		MIT1002_01086	0.79	+0.4
1,195,205	+		MIT1002_01086	0.79	-2.1
1,195,213	-		MIT1002_01086	0.79	+0.6
1,195,213	-		MIT1002_01086	0.79	-3.4
1,195,213	-		MIT1002_01086	0.79	+0.3
1,195,213	-		MIT1002_01086	0.79	-2.3
1,195,214	+		MIT1002_01086	0.79	-1.3
1,195,222	-		MIT1002_01086	0.80	-0.8
1,195,291	-		MIT1002_01086	0.87	-0.5
1,195,309	+		MIT1002_01086	0.89	-1.3
1,195,309	+		MIT1002_01086	0.89	+0.9
1,195,328	+				-2.0
1,195,336	-				-1.3