Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01063

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,172,692	+		MIT1002_01061	0.57	-0.3
1,172,785	-		MIT1002_01061	0.72	+1.2
1,172,845	+		MIT1002_01061	0.82	-1.0
1,172,855	+		MIT1002_01061	0.83	-0.1
1,172,879	+		MIT1002_01061	0.87	-0.6
1,172,892	+		MIT1002_01061	0.89	-1.1
1,172,937	-				+0.5
1,172,965	+				+3.7
1,172,965	+				+0.5
1,173,062	+		MIT1002_01062	0.13	-1.0
1,173,070	-		MIT1002_01062	0.14	+0.4
1,173,072	+		MIT1002_01062	0.15	-0.3
1,173,081	+		MIT1002_01062	0.16	-2.5
1,173,123	-		MIT1002_01062	0.22	-0.4
1,173,133	+		MIT1002_01062	0.23	+1.0
1,173,144	+		MIT1002_01062	0.25	-1.3
1,173,170	-		MIT1002_01062	0.28	-0.2
1,173,170	-		MIT1002_01062	0.28	+0.6
1,173,228	+		MIT1002_01062	0.37	-1.8
1,173,236	-		MIT1002_01062	0.38	+0.7
1,173,249	-		MIT1002_01062	0.40	-0.8
1,173,299	+		MIT1002_01062	0.47	+0.4
1,173,301	+		MIT1002_01062	0.47	-1.6
1,173,515	-		MIT1002_01062	0.77	-0.5
1,173,570	+		MIT1002_01062	0.85	+1.3
1,173,570	+		MIT1002_01062	0.85	-1.3
1,173,578	-		MIT1002_01062	0.86	-1.4
1,173,670	+				+0.0
1,173,672	+				-0.9
1,173,672	+				-0.4
1,173,672	+				+1.4
1,173,680	-				+0.4
1,173,680	-				-0.0
1,173,703	+				+1.8
1,173,875	-		MIT1002_01063	0.18	+0.0
1,174,041	+		MIT1002_01063	0.32	+1.0
1,174,084	+		MIT1002_01063	0.35	+0.7
1,174,099	-		MIT1002_01063	0.37	+1.0
1,174,117	+		MIT1002_01063	0.38	-0.6
1,174,125	-		MIT1002_01063	0.39	+0.8
1,174,176	+		MIT1002_01063	0.43	+0.3
1,174,201	-		MIT1002_01063	0.45	-0.6
1,174,217	-		MIT1002_01063	0.47	-1.6
1,174,219	+		MIT1002_01063	0.47	-0.8
1,174,219	-		MIT1002_01063	0.47	+0.8
1,174,219	-		MIT1002_01063	0.47	+1.7
1,174,227	-		MIT1002_01063	0.47	+1.0
1,174,227	-		MIT1002_01063	0.47	-0.5
1,174,242	+		MIT1002_01063	0.49	+0.1
1,174,262	+		MIT1002_01063	0.50	-0.9
1,174,301	+		MIT1002_01063	0.54	-1.5
1,174,302	-		MIT1002_01063	0.54	+3.2
1,174,309	-		MIT1002_01063	0.54	+0.3
1,174,314	-		MIT1002_01063	0.55	+1.4
1,174,332	-		MIT1002_01063	0.56	+0.9
1,174,372	+		MIT1002_01063	0.60	-0.3
1,174,372	+		MIT1002_01063	0.60	-2.0
1,174,379	-		MIT1002_01063	0.60	-2.0
1,174,379	-		MIT1002_01063	0.60	+0.4
1,174,380	-		MIT1002_01063	0.60	+0.9
1,174,380	-		MIT1002_01063	0.60	-0.6
1,174,380	-		MIT1002_01063	0.60	-1.0
1,174,380	-		MIT1002_01063	0.60	+1.0
1,174,380	-		MIT1002_01063	0.60	+0.1
1,174,395	-		MIT1002_01063	0.62	+3.2
1,174,423	-		MIT1002_01063	0.64	-0.6
1,174,562	+		MIT1002_01063	0.76	+0.9
1,174,570	-		MIT1002_01063	0.77	+1.2
1,174,583	+		MIT1002_01063	0.78	-2.0
1,174,591	-		MIT1002_01063	0.78	+0.9
1,174,604	+		MIT1002_01063	0.80	+0.9
1,174,696	+		MIT1002_01063	0.87	-0.1
1,174,720	+		MIT1002_01063	0.89	+2.2
1,174,754	+				+0.3
1,174,756	-				-1.7
1,174,762	-				+0.5
1,174,772	-				+1.7
1,174,784	+				-2.3
1,174,953	+				-1.4
1,174,953	+				-0.0
1,174,953	+				+0.6
1,174,961	-				+0.9
1,174,977	-		MIT1002_01064	0.11	+0.9
1,174,990	+		MIT1002_01064	0.12	-0.5
1,174,998	-		MIT1002_01064	0.13	-0.2
1,175,027	-		MIT1002_01064	0.15	+0.4
1,175,028	+		MIT1002_01064	0.15	-0.1
1,175,036	-		MIT1002_01064	0.16	+0.7
1,175,036	-		MIT1002_01064	0.16	+1.9
1,175,051	+		MIT1002_01064	0.17	+0.3
1,175,095	+		MIT1002_01064	0.21	-0.8
1,175,248	+		MIT1002_01064	0.34	+0.2
1,175,301	-		MIT1002_01064	0.38	-0.3
1,175,354	+		MIT1002_01064	0.42	-0.1
1,175,365	+		MIT1002_01064	0.43	+0.6
1,175,421	+		MIT1002_01064	0.48	+2.2
1,175,436	-		MIT1002_01064	0.49	-0.8
1,175,588	-		MIT1002_01064	0.62	+0.6
1,175,597	+		MIT1002_01064	0.63	-1.1
1,175,695	+		MIT1002_01064	0.71	+0.9
1,175,695	+		MIT1002_01064	0.71	-0.3
1,175,730	-		MIT1002_01064	0.74	-0.3
1,175,734	+		MIT1002_01064	0.74	-0.6
1,175,762	+		MIT1002_01064	0.77	-0.2
1,175,826	-		MIT1002_01064	0.82	+1.0