Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01057

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,167,065	+		MIT1002_01056	0.34	+1.2
1,167,210	-		MIT1002_01056	0.44	-1.6
1,167,210	-		MIT1002_01056	0.44	+0.3
1,167,223	+		MIT1002_01056	0.45	+0.1
1,167,228	+		MIT1002_01056	0.45	-0.5
1,167,234	-		MIT1002_01056	0.46	-1.3
1,167,338	+		MIT1002_01056	0.53	+0.8
1,167,348	+		MIT1002_01056	0.54	-1.7
1,167,353	+		MIT1002_01056	0.54	-1.6
1,167,353	+		MIT1002_01056	0.54	+0.3
1,167,393	+		MIT1002_01056	0.57	-0.8
1,167,393	+		MIT1002_01056	0.57	+2.5
1,167,416	-		MIT1002_01056	0.59	+0.4
1,167,416	-		MIT1002_01056	0.59	+1.2
1,167,488	-		MIT1002_01056	0.64	-1.2
1,167,521	+		MIT1002_01056	0.66	+0.7
1,167,587	-		MIT1002_01056	0.71	+0.3
1,167,678	+		MIT1002_01056	0.77	+0.2
1,167,727	+		MIT1002_01056	0.81	+2.2
1,167,764	+		MIT1002_01056	0.83	-0.8
1,167,772	+		MIT1002_01056	0.84	-0.7
1,167,772	-		MIT1002_01056	0.84	+2.0
1,167,777	+		MIT1002_01056	0.84	-1.6
1,167,786	+		MIT1002_01056	0.85	-1.9
1,167,786	+		MIT1002_01056	0.85	-2.4
1,167,794	-		MIT1002_01056	0.85	-1.4
1,167,795	+		MIT1002_01056	0.85	+0.2
1,167,795	+		MIT1002_01056	0.85	+0.1
1,167,795	+		MIT1002_01056	0.85	-0.5
1,167,795	+		MIT1002_01056	0.85	-0.8
1,167,803	-		MIT1002_01056	0.86	-1.0
1,167,803	-		MIT1002_01056	0.86	+3.8
1,167,868	-				+0.4
1,167,911	+				-0.6
1,167,919	-				+0.1
1,168,057	-				-0.0
1,168,057	-				+0.2
1,168,089	+		MIT1002_01057	0.10	-0.1
1,168,116	-		MIT1002_01057	0.17	-0.6
1,168,127	-		MIT1002_01057	0.19	-0.3
1,168,149	-		MIT1002_01057	0.24	+0.4
1,168,243	+		MIT1002_01057	0.46	-0.6
1,168,431	+				+0.8
1,168,456	-				-0.9
1,168,456	-				-0.3
1,168,518	+		MIT1002_01058	0.18	-0.5
1,168,518	+		MIT1002_01058	0.18	-1.2
1,168,528	-		MIT1002_01058	0.21	-0.4
1,168,551	+		MIT1002_01058	0.29	-0.2
1,168,569	-		MIT1002_01058	0.35	+0.7
1,168,585	+		MIT1002_01058	0.40	-0.0
1,168,608	-		MIT1002_01058	0.48	-1.6
1,168,613	-		MIT1002_01058	0.50	+0.5
1,168,646	-		MIT1002_01058	0.61	+1.9
1,168,663	+		MIT1002_01058	0.67	+0.6
1,168,663	+		MIT1002_01058	0.67	-1.8
1,168,663	+		MIT1002_01058	0.67	+0.3
1,168,669	-		MIT1002_01058	0.69	+0.2
1,168,669	-		MIT1002_01058	0.69	+1.2
1,168,673	+		MIT1002_01058	0.70	-0.4
1,168,678	+		MIT1002_01058	0.72	-0.3
1,168,678	+		MIT1002_01058	0.72	-0.3
1,168,681	-		MIT1002_01058	0.73	-0.4
1,168,686	-		MIT1002_01058	0.74	-1.5
1,168,743	-				+0.2
1,168,795	+				-1.3
1,168,806	+				-0.6
1,168,806	+				+1.0
1,168,806	+				-0.6
1,168,806	+				-1.4
1,168,806	+				+1.4
1,168,814	-				+0.2
1,168,815	-				-0.6
1,168,887	-				+0.0
1,168,887	-				-0.5
1,168,895	+				+1.5
1,168,911	-				+0.0
1,168,945	+				-0.5
1,169,179	-		MIT1002_01059	0.10	-2.1
1,169,187	-		MIT1002_01059	0.10	+0.3
1,169,208	-		MIT1002_01059	0.11	-0.2
1,169,229	+		MIT1002_01059	0.12	-0.2
1,169,280	+		MIT1002_01059	0.15	+1.6
1,169,288	-		MIT1002_01059	0.15	+1.2
1,169,288	-		MIT1002_01059	0.15	+0.7
1,169,320	-		MIT1002_01059	0.17	-1.4
1,169,391	+		MIT1002_01059	0.20	-0.9
1,169,403	-		MIT1002_01059	0.21	-1.2
1,169,418	-		MIT1002_01059	0.21	+2.1
1,169,428	-		MIT1002_01059	0.22	-1.0
1,169,471	+		MIT1002_01059	0.24	+0.8