Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01056

Experiment: monoculture; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 6
1,165,855	-		MIT1002_01054	0.86	-1.3
1,165,888	+		MIT1002_01054	0.90	+0.3
1,165,943	-				-0.0
1,165,943	-				+1.6
1,165,967	+				-1.8
1,165,975	-				-0.6
1,166,051	+				-0.5
1,166,058	-				+0.1
1,166,097	-				-1.0
1,166,121	+		MIT1002_01055	0.11	-0.3
1,166,129	-		MIT1002_01055	0.13	+0.0
1,166,134	-		MIT1002_01055	0.14	-0.3
1,166,159	-		MIT1002_01055	0.19	-0.8
1,166,280	-		MIT1002_01055	0.43	+1.0
1,166,356	-		MIT1002_01055	0.59	+0.8
1,166,427	+		MIT1002_01055	0.73	+0.6
1,166,493	+		MIT1002_01055	0.87	-1.9
1,166,613	+				+0.5
1,166,621	-				+0.0
1,166,697	+				+0.7
1,166,705	-				+0.6
1,166,716	+				-1.1
1,166,724	-				-0.7
1,166,724	-				+0.6
1,166,724	-				+0.1
1,166,724	-				-0.5
1,166,724	-				-2.7
1,166,815	+		MIT1002_01056	0.16	+2.8
1,166,816	-		MIT1002_01056	0.16	-1.3
1,166,886	-		MIT1002_01056	0.21	-0.5
1,166,891	-		MIT1002_01056	0.22	+0.7
1,166,923	+		MIT1002_01056	0.24	+1.2
1,166,926	-		MIT1002_01056	0.24	+0.7
1,166,928	+		MIT1002_01056	0.24	-1.0
1,166,946	+		MIT1002_01056	0.25	-1.0
1,166,955	-		MIT1002_01056	0.26	+0.7
1,166,963	+		MIT1002_01056	0.27	-0.4
1,166,986	+		MIT1002_01056	0.28	+0.0
1,166,994	-		MIT1002_01056	0.29	+1.2
1,166,994	-		MIT1002_01056	0.29	-0.7
1,167,012	+		MIT1002_01056	0.30	+0.2
1,167,065	+		MIT1002_01056	0.34	+1.2
1,167,210	-		MIT1002_01056	0.44	-1.6
1,167,210	-		MIT1002_01056	0.44	+0.3
1,167,223	+		MIT1002_01056	0.45	+0.1
1,167,228	+		MIT1002_01056	0.45	-0.5
1,167,234	-		MIT1002_01056	0.46	-1.3
1,167,338	+		MIT1002_01056	0.53	+0.8
1,167,348	+		MIT1002_01056	0.54	-1.7
1,167,353	+		MIT1002_01056	0.54	-1.6
1,167,353	+		MIT1002_01056	0.54	+0.3
1,167,393	+		MIT1002_01056	0.57	-0.8
1,167,393	+		MIT1002_01056	0.57	+2.5
1,167,416	-		MIT1002_01056	0.59	+0.4
1,167,416	-		MIT1002_01056	0.59	+1.2
1,167,488	-		MIT1002_01056	0.64	-1.2
1,167,521	+		MIT1002_01056	0.66	+0.7
1,167,587	-		MIT1002_01056	0.71	+0.3
1,167,678	+		MIT1002_01056	0.77	+0.2
1,167,727	+		MIT1002_01056	0.81	+2.2
1,167,764	+		MIT1002_01056	0.83	-0.8
1,167,772	+		MIT1002_01056	0.84	-0.7
1,167,772	-		MIT1002_01056	0.84	+2.0
1,167,777	+		MIT1002_01056	0.84	-1.6
1,167,786	+		MIT1002_01056	0.85	-1.9
1,167,786	+		MIT1002_01056	0.85	-2.4
1,167,794	-		MIT1002_01056	0.85	-1.4
1,167,795	+		MIT1002_01056	0.85	+0.2
1,167,795	+		MIT1002_01056	0.85	+0.1
1,167,795	+		MIT1002_01056	0.85	-0.5
1,167,795	+		MIT1002_01056	0.85	-0.8
1,167,803	-		MIT1002_01056	0.86	-1.0
1,167,803	-		MIT1002_01056	0.86	+3.8
1,167,868	-				+0.4
1,167,911	+				-0.6
1,167,919	-				+0.1
1,168,057	-				-0.0
1,168,057	-				+0.2
1,168,089	+		MIT1002_01057	0.10	-0.1
1,168,116	-		MIT1002_01057	0.17	-0.6
1,168,127	-		MIT1002_01057	0.19	-0.3
1,168,149	-		MIT1002_01057	0.24	+0.4
1,168,243	+		MIT1002_01057	0.46	-0.6
1,168,431	+				+0.8
1,168,456	-				-0.9
1,168,456	-				-0.3
1,168,518	+		MIT1002_01058	0.18	-0.5
1,168,518	+		MIT1002_01058	0.18	-1.2
1,168,528	-		MIT1002_01058	0.21	-0.4
1,168,551	+		MIT1002_01058	0.29	-0.2
1,168,569	-		MIT1002_01058	0.35	+0.7
1,168,585	+		MIT1002_01058	0.40	-0.0
1,168,608	-		MIT1002_01058	0.48	-1.6
1,168,613	-		MIT1002_01058	0.50	+0.5
1,168,646	-		MIT1002_01058	0.61	+1.9
1,168,663	+		MIT1002_01058	0.67	+0.6
1,168,663	+		MIT1002_01058	0.67	-1.8
1,168,663	+		MIT1002_01058	0.67	+0.3
1,168,669	-		MIT1002_01058	0.69	+0.2
1,168,669	-		MIT1002_01058	0.69	+1.2
1,168,673	+		MIT1002_01058	0.70	-0.4
1,168,678	+		MIT1002_01058	0.72	-0.3
1,168,678	+		MIT1002_01058	0.72	-0.3
1,168,681	-		MIT1002_01058	0.73	-0.4
1,168,686	-		MIT1002_01058	0.74	-1.5
1,168,743	-				+0.2
1,168,795	+				-1.3
1,168,806	+				-0.6
1,168,806	+				+1.0
1,168,806	+				-0.6
1,168,806	+				-1.4
1,168,806	+				+1.4
1,168,814	-				+0.2
1,168,815	-				-0.6
1,168,887	-				+0.0
1,168,887	-				-0.5
1,168,895	+				+1.5
1,168,911	-				+0.0
1,168,945	+				-0.5