Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00902

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00900 and MIT1002_00901 are separated by 34 nucleotidesMIT1002_00901 and MIT1002_00902 overlap by 8 nucleotidesMIT1002_00902 and MIT1002_00903 are separated by 192 nucleotides MIT1002_00900: MIT1002_00900 - Na(+)/serine-threonine symporter, at 995,448 to 996,668 _00900 MIT1002_00901: MIT1002_00901 - Formimidoylglutamase, at 996,703 to 997,671 _00901 MIT1002_00902: MIT1002_00902 - Imidazolonepropionase, at 997,664 to 998,923 _00902 MIT1002_00903: MIT1002_00903 - putative HTH-type transcriptional regulator YurK, at 999,116 to 999,940 _00903 Position (kb) 997 998 999Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 996.692 kb on + strandat 996.709 kb on - strandat 996.813 kb on + strand, within MIT1002_00901at 996.813 kb on + strand, within MIT1002_00901at 996.813 kb on - strand, within MIT1002_00901at 996.836 kb on - strand, within MIT1002_00901at 996.836 kb on - strand, within MIT1002_00901at 996.841 kb on - strand, within MIT1002_00901at 996.926 kb on - strand, within MIT1002_00901at 997.007 kb on - strand, within MIT1002_00901at 997.046 kb on + strand, within MIT1002_00901at 997.169 kb on + strand, within MIT1002_00901at 997.169 kb on + strand, within MIT1002_00901at 997.177 kb on - strand, within MIT1002_00901at 997.177 kb on - strand, within MIT1002_00901at 997.182 kb on + strand, within MIT1002_00901at 997.182 kb on + strand, within MIT1002_00901at 997.199 kb on + strand, within MIT1002_00901at 997.286 kb on - strand, within MIT1002_00901at 997.294 kb on - strand, within MIT1002_00901at 997.394 kb on + strand, within MIT1002_00901at 997.444 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.483 kb on + strand, within MIT1002_00901at 997.562 kb on - strand, within MIT1002_00901at 997.575 kb on - strandat 997.617 kb on + strandat 997.647 kb on + strandat 997.669 kb on + strandat 997.680 kb on + strandat 997.688 kb on - strandat 997.688 kb on - strandat 997.688 kb on - strandat 997.794 kb on - strand, within MIT1002_00902at 997.794 kb on - strand, within MIT1002_00902at 997.801 kb on + strand, within MIT1002_00902at 997.809 kb on - strand, within MIT1002_00902at 997.809 kb on - strand, within MIT1002_00902at 997.809 kb on - strand, within MIT1002_00902at 997.843 kb on - strand, within MIT1002_00902at 997.857 kb on + strand, within MIT1002_00902at 997.865 kb on - strand, within MIT1002_00902at 997.875 kb on - strand, within MIT1002_00902at 997.894 kb on + strand, within MIT1002_00902at 997.902 kb on - strand, within MIT1002_00902at 997.955 kb on - strand, within MIT1002_00902at 997.960 kb on + strand, within MIT1002_00902at 997.960 kb on + strand, within MIT1002_00902at 997.960 kb on + strand, within MIT1002_00902at 998.016 kb on + strand, within MIT1002_00902at 998.024 kb on - strand, within MIT1002_00902at 998.102 kb on + strand, within MIT1002_00902at 998.113 kb on - strand, within MIT1002_00902at 998.179 kb on + strand, within MIT1002_00902at 998.182 kb on + strand, within MIT1002_00902at 998.187 kb on - strand, within MIT1002_00902at 998.187 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.195 kb on - strand, within MIT1002_00902at 998.348 kb on - strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.441 kb on - strand, within MIT1002_00902at 998.469 kb on + strand, within MIT1002_00902at 998.512 kb on - strand, within MIT1002_00902at 998.522 kb on - strand, within MIT1002_00902at 998.536 kb on - strand, within MIT1002_00902at 998.593 kb on + strand, within MIT1002_00902at 998.659 kb on - strand, within MIT1002_00902at 998.659 kb on - strand, within MIT1002_00902at 998.743 kb on + strand, within MIT1002_00902at 998.751 kb on + strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.761 kb on + strand, within MIT1002_00902at 998.773 kb on + strand, within MIT1002_00902at 998.850 kb on - strandat 998.858 kb on - strandat 998.858 kb on - strandat 998.881 kb on - strandat 998.912 kb on + strandat 998.920 kb on - strandat 998.927 kb on - strandat 998.927 kb on - strandat 998.929 kb on + strandat 998.942 kb on - strandat 998.996 kb on - strandat 999.130 kb on - strandat 999.130 kb on - strandat 999.130 kb on - strandat 999.135 kb on - strandat 999.135 kb on - strandat 999.198 kb on - strandat 999.228 kb on + strand, within MIT1002_00903at 999.261 kb on + strand, within MIT1002_00903at 999.300 kb on - strand, within MIT1002_00903at 999.312 kb on - strand, within MIT1002_00903at 999.336 kb on + strand, within MIT1002_00903at 999.336 kb on + strand, within MIT1002_00903at 999.369 kb on + strand, within MIT1002_00903at 999.377 kb on - strand, within MIT1002_00903at 999.388 kb on + strand, within MIT1002_00903at 999.491 kb on + strand, within MIT1002_00903at 999.491 kb on + strand, within MIT1002_00903at 999.491 kb on + strand, within MIT1002_00903at 999.499 kb on - strand, within MIT1002_00903at 999.499 kb on - strand, within MIT1002_00903at 999.499 kb on - strand, within MIT1002_00903at 999.515 kb on + strand, within MIT1002_00903at 999.538 kb on + strand, within MIT1002_00903at 999.538 kb on + strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.632 kb on + strand, within MIT1002_00903at 999.632 kb on + strand, within MIT1002_00903at 999.640 kb on - strand, within MIT1002_00903at 999.676 kb on - strand, within MIT1002_00903at 999.683 kb on + strand, within MIT1002_00903at 999.693 kb on + strand, within MIT1002_00903at 999.732 kb on + strand, within MIT1002_00903at 999.740 kb on - strand, within MIT1002_00903at 999.779 kb on - strand, within MIT1002_00903at 999.804 kb on - strand, within MIT1002_00903at 999.813 kb on + strand, within MIT1002_00903at 999.820 kb on + strand, within MIT1002_00903at 999.837 kb on - strand, within MIT1002_00903at 999.880 kb on - strandat 999.880 kb on - strandat 999.887 kb on + strandat 999.887 kb on + strandat 999.887 kb on + strandat 999.887 kb on + strandat 999.895 kb on - strandat 999.895 kb on - strandat 999.895 kb on - strandat 999.895 kb on - strandat 999.896 kb on + strandat 999.900 kb on - strandat 999.900 kb on - strandat 999.900 kb on - strandat 999.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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996,692 + -0.2
996,709 - -0.1
996,813 + MIT1002_00901 0.11 +0.4
996,813 + MIT1002_00901 0.11 -0.1
996,813 - MIT1002_00901 0.11 +1.1
996,836 - MIT1002_00901 0.14 -2.1
996,836 - MIT1002_00901 0.14 +1.7
996,841 - MIT1002_00901 0.14 -0.3
996,926 - MIT1002_00901 0.23 +0.2
997,007 - MIT1002_00901 0.31 +0.2
997,046 + MIT1002_00901 0.35 +0.1
997,169 + MIT1002_00901 0.48 +2.2
997,169 + MIT1002_00901 0.48 -0.6
997,177 - MIT1002_00901 0.49 +1.1
997,177 - MIT1002_00901 0.49 +0.5
997,182 + MIT1002_00901 0.49 +0.9
997,182 + MIT1002_00901 0.49 +0.3
997,199 + MIT1002_00901 0.51 +1.0
997,286 - MIT1002_00901 0.60 +0.4
997,294 - MIT1002_00901 0.61 +0.4
997,394 + MIT1002_00901 0.71 +1.0
997,444 - MIT1002_00901 0.76 -2.1
997,455 - MIT1002_00901 0.78 +0.3
997,455 - MIT1002_00901 0.78 -0.9
997,455 - MIT1002_00901 0.78 -0.9
997,483 + MIT1002_00901 0.80 +1.0
997,562 - MIT1002_00901 0.89 -0.1
997,575 - +0.3
997,617 + -0.2
997,647 + +0.7
997,669 + +1.7
997,680 + +2.1
997,688 - -0.3
997,688 - -0.5
997,688 - -0.8
997,794 - MIT1002_00902 0.10 -1.4
997,794 - MIT1002_00902 0.10 +0.3
997,801 + MIT1002_00902 0.11 -0.1
997,809 - MIT1002_00902 0.12 -1.6
997,809 - MIT1002_00902 0.12 -0.2
997,809 - MIT1002_00902 0.12 +1.5
997,843 - MIT1002_00902 0.14 -0.5
997,857 + MIT1002_00902 0.15 +1.3
997,865 - MIT1002_00902 0.16 -0.1
997,875 - MIT1002_00902 0.17 +1.9
997,894 + MIT1002_00902 0.18 -1.3
997,902 - MIT1002_00902 0.19 -0.1
997,955 - MIT1002_00902 0.23 +0.5
997,960 + MIT1002_00902 0.23 +1.3
997,960 + MIT1002_00902 0.23 -2.0
997,960 + MIT1002_00902 0.23 -1.0
998,016 + MIT1002_00902 0.28 -0.5
998,024 - MIT1002_00902 0.29 +0.1
998,102 + MIT1002_00902 0.35 -1.0
998,113 - MIT1002_00902 0.36 +0.3
998,179 + MIT1002_00902 0.41 -1.1
998,182 + MIT1002_00902 0.41 -2.2
998,187 - MIT1002_00902 0.42 -0.9
998,187 - MIT1002_00902 0.42 -0.3
998,190 - MIT1002_00902 0.42 +3.0
998,190 - MIT1002_00902 0.42 +1.6
998,190 - MIT1002_00902 0.42 +0.4
998,195 - MIT1002_00902 0.42 -1.1
998,348 - MIT1002_00902 0.54 -0.3
998,392 + MIT1002_00902 0.58 +0.6
998,392 + MIT1002_00902 0.58 -0.2
998,392 + MIT1002_00902 0.58 +1.2
998,392 + MIT1002_00902 0.58 -1.3
998,441 - MIT1002_00902 0.62 +0.6
998,469 + MIT1002_00902 0.64 -0.1
998,512 - MIT1002_00902 0.67 -1.0
998,522 - MIT1002_00902 0.68 +0.3
998,536 - MIT1002_00902 0.69 -0.5
998,593 + MIT1002_00902 0.74 -2.1
998,659 - MIT1002_00902 0.79 +0.9
998,659 - MIT1002_00902 0.79 +0.1
998,743 + MIT1002_00902 0.86 +5.8
998,751 + MIT1002_00902 0.86 +0.1
998,759 - MIT1002_00902 0.87 +0.6
998,759 - MIT1002_00902 0.87 -0.4
998,759 - MIT1002_00902 0.87 -2.3
998,759 - MIT1002_00902 0.87 +0.5
998,759 - MIT1002_00902 0.87 -2.5
998,761 + MIT1002_00902 0.87 +0.6
998,773 + MIT1002_00902 0.88 +0.2
998,850 - -1.6
998,858 - +0.4
998,858 - -2.9
998,881 - +0.2
998,912 + -0.2
998,920 - +0.5
998,927 - +0.8
998,927 - -0.1
998,929 + -0.9
998,942 - -0.1
998,996 - -1.3
999,130 - +0.9
999,130 - +0.1
999,130 - -1.0
999,135 - -0.5
999,135 - -2.8
999,198 - +1.9
999,228 + MIT1002_00903 0.14 +0.4
999,261 + MIT1002_00903 0.18 +0.1
999,300 - MIT1002_00903 0.22 -0.1
999,312 - MIT1002_00903 0.24 -1.6
999,336 + MIT1002_00903 0.27 -1.9
999,336 + MIT1002_00903 0.27 +1.4
999,369 + MIT1002_00903 0.31 +1.4
999,377 - MIT1002_00903 0.32 -1.6
999,388 + MIT1002_00903 0.33 -0.3
999,491 + MIT1002_00903 0.45 +0.9
999,491 + MIT1002_00903 0.45 +1.1
999,491 + MIT1002_00903 0.45 -1.7
999,499 - MIT1002_00903 0.46 +2.8
999,499 - MIT1002_00903 0.46 +0.9
999,499 - MIT1002_00903 0.46 -2.2
999,515 + MIT1002_00903 0.48 +1.2
999,538 + MIT1002_00903 0.51 -2.0
999,538 + MIT1002_00903 0.51 +1.1
999,546 - MIT1002_00903 0.52 -1.6
999,546 - MIT1002_00903 0.52 -0.8
999,546 - MIT1002_00903 0.52 +2.6
999,546 - MIT1002_00903 0.52 +0.2
999,546 - MIT1002_00903 0.52 -2.0
999,632 + MIT1002_00903 0.63 +0.3
999,632 + MIT1002_00903 0.63 +0.6
999,640 - MIT1002_00903 0.64 -1.0
999,676 - MIT1002_00903 0.68 +1.0
999,683 + MIT1002_00903 0.69 -1.1
999,693 + MIT1002_00903 0.70 +0.2
999,732 + MIT1002_00903 0.75 -0.6
999,740 - MIT1002_00903 0.76 +1.1
999,779 - MIT1002_00903 0.80 +0.7
999,804 - MIT1002_00903 0.83 +0.9
999,813 + MIT1002_00903 0.84 +0.1
999,820 + MIT1002_00903 0.85 +0.2
999,837 - MIT1002_00903 0.87 -1.0
999,880 - -1.0
999,880 - -0.4
999,887 + -0.1
999,887 + -0.1
999,887 + -1.7
999,887 + +0.6
999,895 - -0.5
999,895 - -0.4
999,895 - -1.0
999,895 - +2.5
999,896 + +1.9
999,900 - -0.7
999,900 - +0.6
999,900 - -0.1
999,905 + -1.8

Or see this region's nucleotide sequence