Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00820

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00819 and MIT1002_00820 are separated by 12 nucleotidesMIT1002_00820 and MIT1002_00821 are separated by 222 nucleotides MIT1002_00819: MIT1002_00819 - Spondin_N, at 903,552 to 904,400 _00819 MIT1002_00820: MIT1002_00820 - Spondin_N, at 904,413 to 905,228 _00820 MIT1002_00821: MIT1002_00821 - Staphylococcal respiratory response protein A, at 905,451 to 906,203 _00821 Position (kb) 904 905 906Strain fitness (log2 ratio) -2 -1 0 1 2at 903.427 kb on - strandat 903.480 kb on - strandat 903.509 kb on - strandat 903.520 kb on - strandat 903.520 kb on - strandat 903.535 kb on + strandat 903.543 kb on - strandat 903.612 kb on - strandat 903.617 kb on - strandat 903.627 kb on - strandat 903.629 kb on + strandat 903.671 kb on - strand, within MIT1002_00819at 903.776 kb on + strand, within MIT1002_00819at 903.792 kb on - strand, within MIT1002_00819at 903.805 kb on - strand, within MIT1002_00819at 903.892 kb on + strand, within MIT1002_00819at 903.927 kb on + strand, within MIT1002_00819at 903.932 kb on + strand, within MIT1002_00819at 903.963 kb on + strand, within MIT1002_00819at 903.964 kb on - strand, within MIT1002_00819at 904.016 kb on - strand, within MIT1002_00819at 904.035 kb on + strand, within MIT1002_00819at 904.043 kb on - strand, within MIT1002_00819at 904.054 kb on + strand, within MIT1002_00819at 904.138 kb on - strand, within MIT1002_00819at 904.148 kb on - strand, within MIT1002_00819at 904.167 kb on - strand, within MIT1002_00819at 904.168 kb on - strand, within MIT1002_00819at 904.175 kb on - strand, within MIT1002_00819at 904.186 kb on - strand, within MIT1002_00819at 904.209 kb on - strand, within MIT1002_00819at 904.247 kb on + strand, within MIT1002_00819at 904.256 kb on - strand, within MIT1002_00819at 904.256 kb on - strand, within MIT1002_00819at 904.256 kb on - strand, within MIT1002_00819at 904.279 kb on + strand, within MIT1002_00819at 904.290 kb on + strand, within MIT1002_00819at 904.298 kb on - strand, within MIT1002_00819at 904.343 kb on + strandat 904.450 kb on - strandat 904.455 kb on - strandat 904.464 kb on + strandat 904.466 kb on + strandat 904.474 kb on - strandat 904.474 kb on - strandat 904.476 kb on + strandat 904.476 kb on + strandat 904.535 kb on + strand, within MIT1002_00820at 904.535 kb on + strand, within MIT1002_00820at 904.535 kb on + strand, within MIT1002_00820at 904.535 kb on + strand, within MIT1002_00820at 904.538 kb on - strand, within MIT1002_00820at 904.628 kb on - strand, within MIT1002_00820at 904.656 kb on + strand, within MIT1002_00820at 904.668 kb on - strand, within MIT1002_00820at 904.687 kb on + strand, within MIT1002_00820at 904.697 kb on + strand, within MIT1002_00820at 904.705 kb on - strand, within MIT1002_00820at 904.713 kb on + strand, within MIT1002_00820at 904.721 kb on - strand, within MIT1002_00820at 904.757 kb on + strand, within MIT1002_00820at 904.773 kb on - strand, within MIT1002_00820at 904.790 kb on + strand, within MIT1002_00820at 904.800 kb on + strand, within MIT1002_00820at 904.800 kb on + strand, within MIT1002_00820at 904.853 kb on + strand, within MIT1002_00820at 904.870 kb on + strand, within MIT1002_00820at 904.892 kb on - strand, within MIT1002_00820at 904.892 kb on - strand, within MIT1002_00820at 904.960 kb on - strand, within MIT1002_00820at 904.977 kb on + strand, within MIT1002_00820at 904.986 kb on + strand, within MIT1002_00820at 905.073 kb on - strand, within MIT1002_00820at 905.111 kb on + strand, within MIT1002_00820at 905.113 kb on + strand, within MIT1002_00820at 905.119 kb on - strand, within MIT1002_00820at 905.203 kb on + strandat 905.572 kb on - strand, within MIT1002_00821at 905.576 kb on + strand, within MIT1002_00821at 905.655 kb on + strand, within MIT1002_00821at 905.734 kb on + strand, within MIT1002_00821at 905.742 kb on - strand, within MIT1002_00821at 905.826 kb on - strand, within MIT1002_00821at 905.828 kb on - strand, within MIT1002_00821at 905.848 kb on - strand, within MIT1002_00821at 905.850 kb on + strand, within MIT1002_00821at 905.850 kb on + strand, within MIT1002_00821at 905.855 kb on + strand, within MIT1002_00821at 905.857 kb on + strand, within MIT1002_00821at 905.865 kb on - strand, within MIT1002_00821at 905.865 kb on - strand, within MIT1002_00821at 905.870 kb on + strand, within MIT1002_00821at 905.885 kb on + strand, within MIT1002_00821at 905.938 kb on + strand, within MIT1002_00821at 905.946 kb on + strand, within MIT1002_00821at 905.946 kb on + strand, within MIT1002_00821at 905.954 kb on - strand, within MIT1002_00821at 906.023 kb on + strand, within MIT1002_00821at 906.023 kb on + strand, within MIT1002_00821at 906.024 kb on + strand, within MIT1002_00821at 906.024 kb on + strand, within MIT1002_00821at 906.045 kb on + strand, within MIT1002_00821at 906.045 kb on + strand, within MIT1002_00821at 906.047 kb on - strand, within MIT1002_00821at 906.053 kb on - strand, within MIT1002_00821at 906.060 kb on + strand, within MIT1002_00821at 906.085 kb on + strand, within MIT1002_00821at 906.140 kb on + strandat 906.169 kb on - strandat 906.198 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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903,427 - +0.9
903,480 - +0.1
903,509 - +0.4
903,520 - +0.1
903,520 - -1.0
903,535 + +0.5
903,543 - +1.6
903,612 - -0.9
903,617 - +0.6
903,627 - +0.8
903,629 + +1.3
903,671 - MIT1002_00819 0.14 -0.7
903,776 + MIT1002_00819 0.26 +1.2
903,792 - MIT1002_00819 0.28 +1.3
903,805 - MIT1002_00819 0.30 -0.0
903,892 + MIT1002_00819 0.40 +2.0
903,927 + MIT1002_00819 0.44 -1.8
903,932 + MIT1002_00819 0.45 +0.3
903,963 + MIT1002_00819 0.48 -0.9
903,964 - MIT1002_00819 0.49 +0.1
904,016 - MIT1002_00819 0.55 -0.2
904,035 + MIT1002_00819 0.57 +0.1
904,043 - MIT1002_00819 0.58 -0.1
904,054 + MIT1002_00819 0.59 -2.6
904,138 - MIT1002_00819 0.69 -1.9
904,148 - MIT1002_00819 0.70 +0.0
904,167 - MIT1002_00819 0.72 -2.5
904,168 - MIT1002_00819 0.73 -2.2
904,175 - MIT1002_00819 0.73 -0.5
904,186 - MIT1002_00819 0.75 +0.6
904,209 - MIT1002_00819 0.77 -2.3
904,247 + MIT1002_00819 0.82 +0.5
904,256 - MIT1002_00819 0.83 +1.8
904,256 - MIT1002_00819 0.83 -1.0
904,256 - MIT1002_00819 0.83 -0.5
904,279 + MIT1002_00819 0.86 +0.3
904,290 + MIT1002_00819 0.87 +0.4
904,298 - MIT1002_00819 0.88 -1.9
904,343 + +0.6
904,450 - +2.2
904,455 - -0.4
904,464 + -0.2
904,466 + -1.0
904,474 - -0.8
904,474 - +1.2
904,476 + +0.1
904,476 + +0.2
904,535 + MIT1002_00820 0.15 -0.1
904,535 + MIT1002_00820 0.15 -0.4
904,535 + MIT1002_00820 0.15 +1.9
904,535 + MIT1002_00820 0.15 +0.7
904,538 - MIT1002_00820 0.15 +0.2
904,628 - MIT1002_00820 0.26 +0.3
904,656 + MIT1002_00820 0.30 +0.4
904,668 - MIT1002_00820 0.31 -0.8
904,687 + MIT1002_00820 0.34 +1.8
904,697 + MIT1002_00820 0.35 +0.2
904,705 - MIT1002_00820 0.36 +0.6
904,713 + MIT1002_00820 0.37 -0.7
904,721 - MIT1002_00820 0.38 +1.9
904,757 + MIT1002_00820 0.42 +0.4
904,773 - MIT1002_00820 0.44 +0.1
904,790 + MIT1002_00820 0.46 +1.6
904,800 + MIT1002_00820 0.47 -0.3
904,800 + MIT1002_00820 0.47 +1.2
904,853 + MIT1002_00820 0.54 +0.2
904,870 + MIT1002_00820 0.56 +0.6
904,892 - MIT1002_00820 0.59 -1.2
904,892 - MIT1002_00820 0.59 -1.9
904,960 - MIT1002_00820 0.67 -1.4
904,977 + MIT1002_00820 0.69 +1.4
904,986 + MIT1002_00820 0.70 -1.6
905,073 - MIT1002_00820 0.81 -0.8
905,111 + MIT1002_00820 0.86 -0.1
905,113 + MIT1002_00820 0.86 +1.6
905,119 - MIT1002_00820 0.87 -1.6
905,203 + -0.3
905,572 - MIT1002_00821 0.16 +0.0
905,576 + MIT1002_00821 0.17 -1.6
905,655 + MIT1002_00821 0.27 -0.5
905,734 + MIT1002_00821 0.38 -1.3
905,742 - MIT1002_00821 0.39 +0.0
905,826 - MIT1002_00821 0.50 -0.0
905,828 - MIT1002_00821 0.50 -1.6
905,848 - MIT1002_00821 0.53 -0.7
905,850 + MIT1002_00821 0.53 -0.2
905,850 + MIT1002_00821 0.53 +0.1
905,855 + MIT1002_00821 0.54 -1.6
905,857 + MIT1002_00821 0.54 +0.7
905,865 - MIT1002_00821 0.55 -0.1
905,865 - MIT1002_00821 0.55 -0.8
905,870 + MIT1002_00821 0.56 +0.1
905,885 + MIT1002_00821 0.58 +0.7
905,938 + MIT1002_00821 0.65 -1.2
905,946 + MIT1002_00821 0.66 +0.2
905,946 + MIT1002_00821 0.66 +0.2
905,954 - MIT1002_00821 0.67 -0.4
906,023 + MIT1002_00821 0.76 -0.5
906,023 + MIT1002_00821 0.76 -1.1
906,024 + MIT1002_00821 0.76 +0.1
906,024 + MIT1002_00821 0.76 -0.9
906,045 + MIT1002_00821 0.79 +0.4
906,045 + MIT1002_00821 0.79 +0.5
906,047 - MIT1002_00821 0.79 -0.9
906,053 - MIT1002_00821 0.80 -2.6
906,060 + MIT1002_00821 0.81 +1.3
906,085 + MIT1002_00821 0.84 -0.8
906,140 + +1.1
906,169 - +0.6
906,198 - -0.4
906,212 - -0.5
906,212 - +0.0

Or see this region's nucleotide sequence