Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00778

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00776 and MIT1002_00777 are separated by 64 nucleotidesMIT1002_00777 and MIT1002_00778 are separated by 171 nucleotidesMIT1002_00778 and MIT1002_00779 are separated by 282 nucleotides MIT1002_00776: MIT1002_00776 - Lysine-sensitive aspartokinase 3, at 858,645 to 859,994 _00776 MIT1002_00777: MIT1002_00777 - SOUL heme-binding protein, at 860,059 to 860,697 _00777 MIT1002_00778: MIT1002_00778 - hypothetical protein, at 860,869 to 862,893 _00778 MIT1002_00779: MIT1002_00779 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 863,176 to 864,003 _00779 Position (kb) 860 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 860.004 kb on - strandat 860.012 kb on - strandat 860.012 kb on - strandat 860.039 kb on - strandat 860.099 kb on - strandat 860.125 kb on + strand, within MIT1002_00777at 860.133 kb on - strand, within MIT1002_00777at 860.133 kb on - strand, within MIT1002_00777at 860.133 kb on - strand, within MIT1002_00777at 860.133 kb on - strand, within MIT1002_00777at 860.145 kb on - strand, within MIT1002_00777at 860.153 kb on - strand, within MIT1002_00777at 860.192 kb on + strand, within MIT1002_00777at 860.376 kb on - strand, within MIT1002_00777at 860.432 kb on - strand, within MIT1002_00777at 860.461 kb on + strand, within MIT1002_00777at 860.469 kb on - strand, within MIT1002_00777at 860.531 kb on - strand, within MIT1002_00777at 860.532 kb on - strand, within MIT1002_00777at 860.583 kb on - strand, within MIT1002_00777at 860.583 kb on - strand, within MIT1002_00777at 860.630 kb on + strand, within MIT1002_00777at 860.667 kb on + strandat 860.756 kb on + strandat 860.764 kb on - strandat 860.764 kb on - strandat 860.764 kb on - strandat 860.766 kb on + strandat 860.774 kb on - strandat 860.774 kb on - strandat 860.774 kb on - strandat 860.774 kb on - strandat 860.797 kb on - strandat 860.797 kb on - strandat 860.797 kb on - strandat 860.805 kb on + strandat 860.844 kb on + strandat 860.873 kb on + strandat 860.873 kb on + strandat 860.904 kb on - strandat 860.910 kb on - strandat 860.922 kb on + strandat 860.942 kb on - strandat 860.965 kb on - strandat 860.972 kb on + strandat 861.102 kb on + strand, within MIT1002_00778at 861.112 kb on - strand, within MIT1002_00778at 861.214 kb on + strand, within MIT1002_00778at 861.250 kb on + strand, within MIT1002_00778at 861.294 kb on - strand, within MIT1002_00778at 861.394 kb on + strand, within MIT1002_00778at 861.501 kb on - strand, within MIT1002_00778at 861.663 kb on - strand, within MIT1002_00778at 861.788 kb on - strand, within MIT1002_00778at 861.851 kb on - strand, within MIT1002_00778at 861.934 kb on - strand, within MIT1002_00778at 862.088 kb on + strand, within MIT1002_00778at 862.096 kb on - strand, within MIT1002_00778at 862.291 kb on - strand, within MIT1002_00778at 862.327 kb on + strand, within MIT1002_00778at 862.365 kb on + strand, within MIT1002_00778at 862.366 kb on - strand, within MIT1002_00778at 862.373 kb on - strand, within MIT1002_00778at 862.373 kb on - strand, within MIT1002_00778at 862.395 kb on - strand, within MIT1002_00778at 862.450 kb on - strand, within MIT1002_00778at 862.450 kb on - strand, within MIT1002_00778at 862.464 kb on - strand, within MIT1002_00778at 862.466 kb on + strand, within MIT1002_00778at 862.509 kb on + strand, within MIT1002_00778at 862.548 kb on - strand, within MIT1002_00778at 862.564 kb on + strand, within MIT1002_00778at 862.572 kb on - strand, within MIT1002_00778at 862.622 kb on - strand, within MIT1002_00778at 862.632 kb on - strand, within MIT1002_00778at 862.666 kb on + strand, within MIT1002_00778at 862.674 kb on - strand, within MIT1002_00778at 862.761 kb on - strandat 862.761 kb on - strandat 862.821 kb on + strandat 862.831 kb on + strandat 862.943 kb on - strandat 863.080 kb on - strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.304 kb on + strand, within MIT1002_00779at 863.383 kb on + strand, within MIT1002_00779at 863.383 kb on + strand, within MIT1002_00779at 863.391 kb on - strand, within MIT1002_00779at 863.391 kb on - strand, within MIT1002_00779at 863.455 kb on + strand, within MIT1002_00779at 863.469 kb on + strand, within MIT1002_00779at 863.601 kb on - strand, within MIT1002_00779at 863.649 kb on - strand, within MIT1002_00779at 863.685 kb on + strand, within MIT1002_00779at 863.685 kb on + strand, within MIT1002_00779at 863.721 kb on - strand, within MIT1002_00779at 863.728 kb on - strand, within MIT1002_00779at 863.733 kb on + strand, within MIT1002_00779at 863.813 kb on + strand, within MIT1002_00779at 863.813 kb on + strand, within MIT1002_00779at 863.821 kb on - strand, within MIT1002_00779

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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860,004 - -0.5
860,012 - -0.0
860,012 - +0.3
860,039 - +1.7
860,099 - +0.3
860,125 + MIT1002_00777 0.10 +0.7
860,133 - MIT1002_00777 0.12 -0.8
860,133 - MIT1002_00777 0.12 +0.8
860,133 - MIT1002_00777 0.12 +1.6
860,133 - MIT1002_00777 0.12 +0.0
860,145 - MIT1002_00777 0.13 -0.4
860,153 - MIT1002_00777 0.15 +1.3
860,192 + MIT1002_00777 0.21 +0.4
860,376 - MIT1002_00777 0.50 -1.4
860,432 - MIT1002_00777 0.58 +0.2
860,461 + MIT1002_00777 0.63 +0.4
860,469 - MIT1002_00777 0.64 -0.5
860,531 - MIT1002_00777 0.74 -2.2
860,532 - MIT1002_00777 0.74 +0.6
860,583 - MIT1002_00777 0.82 -1.6
860,583 - MIT1002_00777 0.82 +1.9
860,630 + MIT1002_00777 0.89 -0.7
860,667 + -0.1
860,756 + +0.2
860,764 - -0.1
860,764 - -0.3
860,764 - +0.2
860,766 + +2.7
860,774 - -1.3
860,774 - +1.2
860,774 - -1.0
860,774 - -1.0
860,797 - +0.6
860,797 - -0.5
860,797 - -0.6
860,805 + -0.2
860,844 + -0.5
860,873 + -2.8
860,873 + -0.0
860,904 - -0.0
860,910 - +0.5
860,922 + -2.8
860,942 - +0.2
860,965 - +0.7
860,972 + -2.1
861,102 + MIT1002_00778 0.12 +1.6
861,112 - MIT1002_00778 0.12 -1.6
861,214 + MIT1002_00778 0.17 -0.0
861,250 + MIT1002_00778 0.19 -1.0
861,294 - MIT1002_00778 0.21 -0.3
861,394 + MIT1002_00778 0.26 -1.3
861,501 - MIT1002_00778 0.31 +0.5
861,663 - MIT1002_00778 0.39 -0.1
861,788 - MIT1002_00778 0.45 +1.9
861,851 - MIT1002_00778 0.48 -0.7
861,934 - MIT1002_00778 0.53 +0.3
862,088 + MIT1002_00778 0.60 +0.4
862,096 - MIT1002_00778 0.61 -0.4
862,291 - MIT1002_00778 0.70 -0.2
862,327 + MIT1002_00778 0.72 -0.7
862,365 + MIT1002_00778 0.74 -1.2
862,366 - MIT1002_00778 0.74 +0.7
862,373 - MIT1002_00778 0.74 -1.1
862,373 - MIT1002_00778 0.74 -0.6
862,395 - MIT1002_00778 0.75 +0.5
862,450 - MIT1002_00778 0.78 +1.0
862,450 - MIT1002_00778 0.78 -1.9
862,464 - MIT1002_00778 0.79 -0.1
862,466 + MIT1002_00778 0.79 +0.2
862,509 + MIT1002_00778 0.81 -0.1
862,548 - MIT1002_00778 0.83 -0.3
862,564 + MIT1002_00778 0.84 -1.6
862,572 - MIT1002_00778 0.84 -0.6
862,622 - MIT1002_00778 0.87 -0.4
862,632 - MIT1002_00778 0.87 +0.6
862,666 + MIT1002_00778 0.89 +3.2
862,674 - MIT1002_00778 0.89 -2.5
862,761 - +0.6
862,761 - -0.1
862,821 + +0.6
862,831 + -1.2
862,943 - -1.0
863,080 - +1.1
863,230 - -0.2
863,230 - +0.9
863,304 + MIT1002_00779 0.15 -0.9
863,383 + MIT1002_00779 0.25 -1.0
863,383 + MIT1002_00779 0.25 +1.1
863,391 - MIT1002_00779 0.26 -0.9
863,391 - MIT1002_00779 0.26 -1.1
863,455 + MIT1002_00779 0.34 +1.5
863,469 + MIT1002_00779 0.35 +1.4
863,601 - MIT1002_00779 0.51 +0.2
863,649 - MIT1002_00779 0.57 +0.5
863,685 + MIT1002_00779 0.61 -0.2
863,685 + MIT1002_00779 0.61 -0.8
863,721 - MIT1002_00779 0.66 -0.2
863,728 - MIT1002_00779 0.67 -0.2
863,733 + MIT1002_00779 0.67 +0.2
863,813 + MIT1002_00779 0.77 +1.2
863,813 + MIT1002_00779 0.77 -0.4
863,821 - MIT1002_00779 0.78 +0.6

Or see this region's nucleotide sequence