Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00745 and MIT1002_00746 are separated by 449 nucleotides MIT1002_00746 and MIT1002_00747 are separated by 126 nucleotides
MIT1002_00745: MIT1002_00745 - Peptidase family M49, at 815,858 to 817,552
_00745
MIT1002_00746: MIT1002_00746 - HDOD domain protein, at 818,002 to 818,838
_00746
MIT1002_00747: MIT1002_00747 - Inner membrane protein YdcO, at 818,965 to 820,155
_00747
Position (kb) 818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 817.025 kb on - strand, within MIT1002_00745 at 817.060 kb on + strand, within MIT1002_00745 at 817.061 kb on + strand, within MIT1002_00745 at 817.124 kb on - strand, within MIT1002_00745 at 817.207 kb on - strand, within MIT1002_00745 at 817.351 kb on + strand, within MIT1002_00745 at 817.352 kb on - strand, within MIT1002_00745 at 817.372 kb on + strand, within MIT1002_00745 at 817.372 kb on + strand, within MIT1002_00745 at 817.442 kb on - strand at 817.467 kb on - strand at 817.504 kb on - strand at 817.584 kb on + strand at 817.723 kb on + strand at 817.746 kb on + strand at 817.746 kb on + strand at 817.775 kb on + strand at 817.799 kb on - strand at 817.850 kb on + strand at 817.850 kb on + strand at 817.850 kb on + strand at 817.850 kb on + strand at 817.858 kb on - strand at 817.870 kb on - strand at 817.976 kb on + strand at 817.984 kb on - strand at 817.994 kb on - strand at 818.011 kb on - strand at 818.011 kb on - strand at 818.061 kb on + strand at 818.087 kb on + strand, within MIT1002_00746 at 818.105 kb on + strand, within MIT1002_00746 at 818.160 kb on - strand, within MIT1002_00746 at 818.206 kb on - strand, within MIT1002_00746 at 818.376 kb on + strand, within MIT1002_00746 at 818.382 kb on + strand, within MIT1002_00746 at 818.382 kb on + strand, within MIT1002_00746 at 818.392 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.408 kb on - strand, within MIT1002_00746 at 818.408 kb on - strand, within MIT1002_00746 at 818.472 kb on + strand, within MIT1002_00746 at 818.479 kb on - strand, within MIT1002_00746 at 818.510 kb on + strand, within MIT1002_00746 at 818.510 kb on + strand, within MIT1002_00746 at 818.520 kb on - strand, within MIT1002_00746 at 818.529 kb on + strand, within MIT1002_00746 at 818.601 kb on - strand, within MIT1002_00746 at 818.601 kb on - strand, within MIT1002_00746 at 818.641 kb on + strand, within MIT1002_00746 at 818.649 kb on - strand, within MIT1002_00746 at 818.650 kb on - strand, within MIT1002_00746 at 818.662 kb on + strand, within MIT1002_00746 at 818.670 kb on - strand, within MIT1002_00746 at 818.677 kb on + strand, within MIT1002_00746 at 818.718 kb on - strand, within MIT1002_00746 at 818.803 kb on - strand at 818.813 kb on - strand at 818.835 kb on - strand at 818.874 kb on - strand at 818.885 kb on + strand at 818.893 kb on - strand at 818.893 kb on - strand at 818.893 kb on - strand at 818.942 kb on - strand at 818.954 kb on + strand at 818.991 kb on - strand at 819.001 kb on + strand at 819.006 kb on + strand at 819.055 kb on + strand at 819.082 kb on - strand at 819.100 kb on - strand, within MIT1002_00747 at 819.100 kb on - strand, within MIT1002_00747 at 819.100 kb on - strand, within MIT1002_00747 at 819.116 kb on - strand, within MIT1002_00747 at 819.121 kb on + strand, within MIT1002_00747 at 819.131 kb on - strand, within MIT1002_00747 at 819.152 kb on - strand, within MIT1002_00747 at 819.185 kb on + strand, within MIT1002_00747 at 819.263 kb on + strand, within MIT1002_00747 at 819.271 kb on - strand, within MIT1002_00747 at 819.271 kb on - strand, within MIT1002_00747 at 819.302 kb on + strand, within MIT1002_00747 at 819.302 kb on + strand, within MIT1002_00747 at 819.367 kb on + strand, within MIT1002_00747 at 819.370 kb on - strand, within MIT1002_00747 at 819.375 kb on - strand, within MIT1002_00747 at 819.375 kb on - strand, within MIT1002_00747 at 819.437 kb on + strand, within MIT1002_00747 at 819.498 kb on + strand, within MIT1002_00747 at 819.506 kb on - strand, within MIT1002_00747 at 819.510 kb on + strand, within MIT1002_00747 at 819.544 kb on - strand, within MIT1002_00747 at 819.544 kb on - strand, within MIT1002_00747 at 819.546 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.569 kb on + strand, within MIT1002_00747 at 819.610 kb on - strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.659 kb on - strand, within MIT1002_00747 at 819.659 kb on - strand, within MIT1002_00747 at 819.751 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.832 kb on + strand, within MIT1002_00747 at 819.832 kb on + strand, within MIT1002_00747 at 819.833 kb on - strand, within MIT1002_00747
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 817,025 - MIT1002_00745 0.69 -1.4 817,060 + MIT1002_00745 0.71 -1.6 817,061 + MIT1002_00745 0.71 +11.5 817,124 - MIT1002_00745 0.75 -0.2 817,207 - MIT1002_00745 0.80 +1.0 817,351 + MIT1002_00745 0.88 +0.6 817,352 - MIT1002_00745 0.88 +0.4 817,372 + MIT1002_00745 0.89 -1.5 817,372 + MIT1002_00745 0.89 +0.2 817,442 - +0.6 817,467 - +1.1 817,504 - +0.4 817,584 + +0.4 817,723 + -0.8 817,746 + -2.8 817,746 + -1.7 817,775 + -0.7 817,799 - -1.7 817,850 + -0.4 817,850 + +1.4 817,850 + -1.0 817,850 + -0.1 817,858 - -0.8 817,870 - +0.8 817,976 + +0.1 817,984 - +1.2 817,994 - +0.2 818,011 - -0.0 818,011 - -0.0 818,061 + -2.1 818,087 + MIT1002_00746 0.10 -1.2 818,105 + MIT1002_00746 0.12 -1.9 818,160 - MIT1002_00746 0.19 -0.0 818,206 - MIT1002_00746 0.24 -0.0 818,376 + MIT1002_00746 0.45 +0.9 818,382 + MIT1002_00746 0.45 +0.3 818,382 + MIT1002_00746 0.45 +0.1 818,392 + MIT1002_00746 0.47 -1.0 818,400 + MIT1002_00746 0.48 +1.0 818,400 + MIT1002_00746 0.48 +0.0 818,400 + MIT1002_00746 0.48 +1.3 818,400 + MIT1002_00746 0.48 -1.9 818,408 - MIT1002_00746 0.49 -0.6 818,408 - MIT1002_00746 0.49 +1.5 818,472 + MIT1002_00746 0.56 -0.5 818,479 - MIT1002_00746 0.57 -1.0 818,510 + MIT1002_00746 0.61 +0.5 818,510 + MIT1002_00746 0.61 -0.5 818,520 - MIT1002_00746 0.62 -1.0 818,529 + MIT1002_00746 0.63 -0.6 818,601 - MIT1002_00746 0.72 -0.8 818,601 - MIT1002_00746 0.72 +3.2 818,641 + MIT1002_00746 0.76 -0.8 818,649 - MIT1002_00746 0.77 +0.2 818,650 - MIT1002_00746 0.77 +2.0 818,662 + MIT1002_00746 0.79 +0.4 818,670 - MIT1002_00746 0.80 +0.5 818,677 + MIT1002_00746 0.81 -0.6 818,718 - MIT1002_00746 0.86 -1.5 818,803 - +2.2 818,813 - +1.8 818,835 - -0.7 818,874 - -0.1 818,885 + -1.9 818,893 - +0.7 818,893 - +1.9 818,893 - +0.5 818,942 - +0.1 818,954 + +1.3 818,991 - +0.6 819,001 + -0.2 819,006 + -0.1 819,055 + -0.4 819,082 - +0.1 819,100 - MIT1002_00747 0.11 -0.9 819,100 - MIT1002_00747 0.11 +0.2 819,100 - MIT1002_00747 0.11 -1.4 819,116 - MIT1002_00747 0.13 +0.5 819,121 + MIT1002_00747 0.13 -0.6 819,131 - MIT1002_00747 0.14 -0.2 819,152 - MIT1002_00747 0.16 -0.8 819,185 + MIT1002_00747 0.18 -0.5 819,263 + MIT1002_00747 0.25 +2.3 819,271 - MIT1002_00747 0.26 +0.2 819,271 - MIT1002_00747 0.26 +0.9 819,302 + MIT1002_00747 0.28 +0.5 819,302 + MIT1002_00747 0.28 -0.5 819,367 + MIT1002_00747 0.34 -0.8 819,370 - MIT1002_00747 0.34 -0.5 819,375 - MIT1002_00747 0.34 +0.5 819,375 - MIT1002_00747 0.34 +1.2 819,437 + MIT1002_00747 0.40 +1.0 819,498 + MIT1002_00747 0.45 -0.4 819,506 - MIT1002_00747 0.45 +1.1 819,510 + MIT1002_00747 0.46 +1.2 819,544 - MIT1002_00747 0.49 +0.6 819,544 - MIT1002_00747 0.49 -1.1 819,546 + MIT1002_00747 0.49 +2.0 819,564 + MIT1002_00747 0.50 -0.1 819,564 + MIT1002_00747 0.50 -1.2 819,564 + MIT1002_00747 0.50 +0.6 819,569 + MIT1002_00747 0.51 +1.5 819,610 - MIT1002_00747 0.54 -0.5 819,651 + MIT1002_00747 0.58 -0.7 819,651 + MIT1002_00747 0.58 -0.3 819,651 + MIT1002_00747 0.58 -1.0 819,651 + MIT1002_00747 0.58 -0.4 819,651 + MIT1002_00747 0.58 -0.3 819,659 - MIT1002_00747 0.58 +1.1 819,659 - MIT1002_00747 0.58 -2.2 819,751 + MIT1002_00747 0.66 +0.0 819,825 + MIT1002_00747 0.72 -2.4 819,825 + MIT1002_00747 0.72 -1.7 819,825 + MIT1002_00747 0.72 +1.9 819,832 + MIT1002_00747 0.73 -3.1 819,832 + MIT1002_00747 0.73 +0.4 819,833 - MIT1002_00747 0.73 -0.6
Or see this region's nucleotide sequence