Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00734 and MIT1002_00735 are separated by 204 nucleotides MIT1002_00735 and MIT1002_00736 are separated by 80 nucleotides MIT1002_00736 and MIT1002_00737 overlap by 39 nucleotides MIT1002_00737 and MIT1002_00738 are separated by 520 nucleotides
MIT1002_00734: MIT1002_00734 - DNA primase, at 806,758 to 808,536
_00734
MIT1002_00735: MIT1002_00735 - hypothetical protein, at 808,741 to 809,187
_00735
MIT1002_00736: MIT1002_00736 - hypothetical protein, at 809,268 to 809,465
_00736
MIT1002_00737: MIT1002_00737 - 30S ribosomal protein S21, at 809,427 to 809,642
_00737
MIT1002_00738: MIT1002_00738 - t(6)A37 threonylcarbamoyladenosine biosynthesis protein, at 810,163 to 811,188
_00738
Position (kb) 808
809
810 Strain fitness (log2 ratio) -2
-1
0
1
2 at 808.633 kb on - strand at 808.633 kb on - strand at 808.688 kb on + strand at 808.698 kb on + strand at 808.737 kb on + strand at 808.737 kb on + strand at 808.737 kb on + strand at 808.739 kb on + strand at 808.745 kb on - strand at 808.795 kb on + strand, within MIT1002_00735 at 808.795 kb on + strand, within MIT1002_00735 at 808.795 kb on + strand, within MIT1002_00735 at 808.803 kb on - strand, within MIT1002_00735 at 808.803 kb on - strand, within MIT1002_00735 at 808.803 kb on - strand, within MIT1002_00735 at 808.803 kb on - strand, within MIT1002_00735 at 808.803 kb on - strand, within MIT1002_00735 at 808.803 kb on - strand, within MIT1002_00735 at 808.817 kb on - strand, within MIT1002_00735 at 808.827 kb on - strand, within MIT1002_00735 at 808.832 kb on + strand, within MIT1002_00735 at 808.859 kb on - strand, within MIT1002_00735 at 808.987 kb on + strand, within MIT1002_00735 at 809.020 kb on - strand, within MIT1002_00735 at 809.026 kb on + strand, within MIT1002_00735 at 809.026 kb on + strand, within MIT1002_00735 at 809.162 kb on + strand at 809.162 kb on + strand at 809.258 kb on + strand at 809.266 kb on - strand at 809.266 kb on - strand at 809.285 kb on - strand at 809.809 kb on + strand at 809.872 kb on + strand at 809.964 kb on + strand at 809.964 kb on + strand at 809.969 kb on + strand at 809.969 kb on + strand at 810.068 kb on + strand at 810.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 808,633 - +0.7 808,633 - +1.2 808,688 + +0.9 808,698 + -0.4 808,737 + +0.6 808,737 + +0.2 808,737 + +0.8 808,739 + -0.4 808,745 - -0.3 808,795 + MIT1002_00735 0.12 +0.8 808,795 + MIT1002_00735 0.12 -1.2 808,795 + MIT1002_00735 0.12 -1.3 808,803 - MIT1002_00735 0.14 -1.3 808,803 - MIT1002_00735 0.14 +0.6 808,803 - MIT1002_00735 0.14 -1.6 808,803 - MIT1002_00735 0.14 -1.9 808,803 - MIT1002_00735 0.14 -0.0 808,803 - MIT1002_00735 0.14 +1.0 808,817 - MIT1002_00735 0.17 -0.8 808,827 - MIT1002_00735 0.19 +0.7 808,832 + MIT1002_00735 0.20 +0.6 808,859 - MIT1002_00735 0.26 -0.8 808,987 + MIT1002_00735 0.55 -1.3 809,020 - MIT1002_00735 0.62 +0.3 809,026 + MIT1002_00735 0.64 -0.3 809,026 + MIT1002_00735 0.64 +1.9 809,162 + +1.3 809,162 + -0.6 809,258 + +2.0 809,266 - -2.4 809,266 - -0.4 809,285 - -0.4 809,809 + +1.2 809,872 + +0.8 809,964 + +1.1 809,964 + -0.8 809,969 + -1.6 809,969 + +2.4 810,068 + -1.1 810,145 + -0.5
Or see this region's nucleotide sequence