Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00542

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00541 and MIT1002_00542 are separated by 159 nucleotidesMIT1002_00542 and MIT1002_00543 are separated by 18 nucleotides MIT1002_00541: MIT1002_00541 - Mechanosensitive ion channel, at 589,858 to 590,928 _00541 MIT1002_00542: MIT1002_00542 - hypothetical protein, at 591,088 to 592,590 _00542 MIT1002_00543: MIT1002_00543 - N-acetylmuramic acid 6-phosphate etherase, at 592,609 to 593,622 _00543 Position (kb) 591 592 593Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 590.105 kb on - strand, within MIT1002_00541at 590.107 kb on - strand, within MIT1002_00541at 590.107 kb on - strand, within MIT1002_00541at 590.107 kb on - strand, within MIT1002_00541at 590.124 kb on + strand, within MIT1002_00541at 590.212 kb on - strand, within MIT1002_00541at 590.425 kb on + strand, within MIT1002_00541at 590.443 kb on - strand, within MIT1002_00541at 590.488 kb on - strand, within MIT1002_00541at 590.553 kb on - strand, within MIT1002_00541at 590.596 kb on + strand, within MIT1002_00541at 590.661 kb on + strand, within MIT1002_00541at 590.669 kb on - strand, within MIT1002_00541at 590.675 kb on + strand, within MIT1002_00541at 590.752 kb on + strand, within MIT1002_00541at 591.031 kb on + strandat 591.217 kb on - strandat 591.369 kb on - strand, within MIT1002_00542at 591.458 kb on - strand, within MIT1002_00542at 591.557 kb on + strand, within MIT1002_00542at 591.588 kb on + strand, within MIT1002_00542at 591.588 kb on + strand, within MIT1002_00542at 591.588 kb on + strand, within MIT1002_00542at 591.591 kb on - strand, within MIT1002_00542at 591.593 kb on + strand, within MIT1002_00542at 591.593 kb on + strand, within MIT1002_00542at 591.596 kb on - strand, within MIT1002_00542at 591.596 kb on - strand, within MIT1002_00542at 591.601 kb on - strand, within MIT1002_00542at 591.601 kb on - strand, within MIT1002_00542at 591.601 kb on - strand, within MIT1002_00542at 591.624 kb on + strand, within MIT1002_00542at 591.636 kb on + strand, within MIT1002_00542at 591.662 kb on - strand, within MIT1002_00542at 591.697 kb on - strand, within MIT1002_00542at 591.697 kb on - strand, within MIT1002_00542at 591.704 kb on - strand, within MIT1002_00542at 591.720 kb on + strand, within MIT1002_00542at 591.779 kb on - strand, within MIT1002_00542at 591.781 kb on - strand, within MIT1002_00542at 591.789 kb on - strand, within MIT1002_00542at 591.842 kb on - strand, within MIT1002_00542at 591.864 kb on + strand, within MIT1002_00542at 591.872 kb on - strand, within MIT1002_00542at 591.882 kb on - strand, within MIT1002_00542at 591.967 kb on - strand, within MIT1002_00542at 591.981 kb on + strand, within MIT1002_00542at 591.989 kb on - strand, within MIT1002_00542at 592.006 kb on + strand, within MIT1002_00542at 592.038 kb on - strand, within MIT1002_00542at 592.057 kb on - strand, within MIT1002_00542at 592.128 kb on + strand, within MIT1002_00542at 592.143 kb on + strand, within MIT1002_00542at 592.151 kb on - strand, within MIT1002_00542at 592.151 kb on - strand, within MIT1002_00542at 592.151 kb on - strand, within MIT1002_00542at 592.161 kb on - strand, within MIT1002_00542at 592.196 kb on + strand, within MIT1002_00542at 592.228 kb on - strand, within MIT1002_00542at 592.253 kb on - strand, within MIT1002_00542at 592.253 kb on - strand, within MIT1002_00542at 592.253 kb on - strand, within MIT1002_00542at 592.269 kb on + strand, within MIT1002_00542at 592.342 kb on - strand, within MIT1002_00542at 592.365 kb on - strand, within MIT1002_00542at 592.380 kb on + strand, within MIT1002_00542at 592.395 kb on - strand, within MIT1002_00542at 592.413 kb on + strand, within MIT1002_00542at 592.430 kb on - strand, within MIT1002_00542at 592.506 kb on + strandat 592.592 kb on + strandat 592.600 kb on - strandat 592.642 kb on - strandat 592.861 kb on - strand, within MIT1002_00543at 592.913 kb on + strand, within MIT1002_00543at 592.955 kb on - strand, within MIT1002_00543at 592.966 kb on + strand, within MIT1002_00543at 593.068 kb on + strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.108 kb on + strand, within MIT1002_00543at 593.118 kb on + strand, within MIT1002_00543at 593.126 kb on - strand, within MIT1002_00543at 593.126 kb on - strand, within MIT1002_00543at 593.139 kb on + strand, within MIT1002_00543at 593.157 kb on - strand, within MIT1002_00543at 593.175 kb on + strand, within MIT1002_00543at 593.227 kb on - strand, within MIT1002_00543at 593.252 kb on + strand, within MIT1002_00543at 593.538 kb on - strandat 593.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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590,105 - MIT1002_00541 0.23 +0.2
590,107 - MIT1002_00541 0.23 -0.2
590,107 - MIT1002_00541 0.23 -0.1
590,107 - MIT1002_00541 0.23 +2.7
590,124 + MIT1002_00541 0.25 +0.6
590,212 - MIT1002_00541 0.33 +0.4
590,425 + MIT1002_00541 0.53 +0.5
590,443 - MIT1002_00541 0.55 +0.5
590,488 - MIT1002_00541 0.59 -0.3
590,553 - MIT1002_00541 0.65 -1.2
590,596 + MIT1002_00541 0.69 +0.2
590,661 + MIT1002_00541 0.75 +0.2
590,669 - MIT1002_00541 0.76 +0.9
590,675 + MIT1002_00541 0.76 +0.0
590,752 + MIT1002_00541 0.83 +0.5
591,031 + +0.1
591,217 - +0.1
591,369 - MIT1002_00542 0.19 +0.0
591,458 - MIT1002_00542 0.25 -2.2
591,557 + MIT1002_00542 0.31 +1.2
591,588 + MIT1002_00542 0.33 +0.9
591,588 + MIT1002_00542 0.33 -0.1
591,588 + MIT1002_00542 0.33 +0.8
591,591 - MIT1002_00542 0.33 +1.1
591,593 + MIT1002_00542 0.34 +1.8
591,593 + MIT1002_00542 0.34 +0.4
591,596 - MIT1002_00542 0.34 +0.1
591,596 - MIT1002_00542 0.34 +1.1
591,601 - MIT1002_00542 0.34 -0.1
591,601 - MIT1002_00542 0.34 -0.5
591,601 - MIT1002_00542 0.34 +1.6
591,624 + MIT1002_00542 0.36 +1.3
591,636 + MIT1002_00542 0.36 -1.2
591,662 - MIT1002_00542 0.38 +0.0
591,697 - MIT1002_00542 0.41 -1.6
591,697 - MIT1002_00542 0.41 +1.2
591,704 - MIT1002_00542 0.41 +0.2
591,720 + MIT1002_00542 0.42 -0.5
591,779 - MIT1002_00542 0.46 +0.7
591,781 - MIT1002_00542 0.46 +0.1
591,789 - MIT1002_00542 0.47 +0.1
591,842 - MIT1002_00542 0.50 -0.6
591,864 + MIT1002_00542 0.52 +0.8
591,872 - MIT1002_00542 0.52 -0.6
591,882 - MIT1002_00542 0.53 +2.4
591,967 - MIT1002_00542 0.58 +0.2
591,981 + MIT1002_00542 0.59 +0.2
591,989 - MIT1002_00542 0.60 +1.6
592,006 + MIT1002_00542 0.61 -2.5
592,038 - MIT1002_00542 0.63 -0.5
592,057 - MIT1002_00542 0.64 -0.4
592,128 + MIT1002_00542 0.69 +2.9
592,143 + MIT1002_00542 0.70 +1.2
592,151 - MIT1002_00542 0.71 +0.4
592,151 - MIT1002_00542 0.71 +1.5
592,151 - MIT1002_00542 0.71 +1.5
592,161 - MIT1002_00542 0.71 -1.4
592,196 + MIT1002_00542 0.74 -2.9
592,228 - MIT1002_00542 0.76 +0.5
592,253 - MIT1002_00542 0.78 -1.0
592,253 - MIT1002_00542 0.78 -0.2
592,253 - MIT1002_00542 0.78 +2.6
592,269 + MIT1002_00542 0.79 +0.4
592,342 - MIT1002_00542 0.83 +2.5
592,365 - MIT1002_00542 0.85 +0.9
592,380 + MIT1002_00542 0.86 -0.8
592,395 - MIT1002_00542 0.87 +0.3
592,413 + MIT1002_00542 0.88 -0.2
592,430 - MIT1002_00542 0.89 +0.9
592,506 + -0.2
592,592 + -0.3
592,600 - -1.8
592,642 - -1.5
592,861 - MIT1002_00543 0.25 -2.1
592,913 + MIT1002_00543 0.30 -0.0
592,955 - MIT1002_00543 0.34 +0.2
592,966 + MIT1002_00543 0.35 +0.1
593,068 + MIT1002_00543 0.45 -0.5
593,084 - MIT1002_00543 0.47 -0.2
593,084 - MIT1002_00543 0.47 -0.4
593,084 - MIT1002_00543 0.47 +1.0
593,084 - MIT1002_00543 0.47 +1.5
593,084 - MIT1002_00543 0.47 +2.6
593,084 - MIT1002_00543 0.47 +0.3
593,108 + MIT1002_00543 0.49 -2.1
593,118 + MIT1002_00543 0.50 -0.3
593,126 - MIT1002_00543 0.51 -0.4
593,126 - MIT1002_00543 0.51 +0.1
593,139 + MIT1002_00543 0.52 -0.7
593,157 - MIT1002_00543 0.54 +0.7
593,175 + MIT1002_00543 0.56 -0.7
593,227 - MIT1002_00543 0.61 +0.2
593,252 + MIT1002_00543 0.63 +0.7
593,538 - +2.3
593,550 + +0.0

Or see this region's nucleotide sequence