Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00509

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00507 and MIT1002_00508 are separated by 0 nucleotidesMIT1002_00508 and MIT1002_00509 are separated by 25 nucleotidesMIT1002_00509 and MIT1002_00510 are separated by 0 nucleotidesMIT1002_00510 and MIT1002_00511 are separated by 12 nucleotides MIT1002_00507: MIT1002_00507 - Sec-independent protein translocase protein TatB, at 550,724 to 551,023 _00507 MIT1002_00508: MIT1002_00508 - Sec-independent protein translocase protein TatC, at 551,024 to 551,779 _00508 MIT1002_00509: MIT1002_00509 - hypothetical protein, at 551,805 to 552,347 _00509 MIT1002_00510: MIT1002_00510 - Deoxyribonuclease TatD, at 552,348 to 553,124 _00510 MIT1002_00511: MIT1002_00511 - Bacteriophytochrome cph2, at 553,137 to 555,035 _00511 Position (kb) 551 552 553Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 551.838 kb on - strandat 551.845 kb on + strandat 551.935 kb on + strand, within MIT1002_00509at 551.948 kb on + strand, within MIT1002_00509at 551.973 kb on + strand, within MIT1002_00509at 551.973 kb on + strand, within MIT1002_00509at 551.997 kb on + strand, within MIT1002_00509at 552.011 kb on - strand, within MIT1002_00509at 552.022 kb on - strand, within MIT1002_00509at 552.066 kb on + strand, within MIT1002_00509at 552.073 kb on + strand, within MIT1002_00509at 552.081 kb on - strand, within MIT1002_00509at 552.086 kb on + strand, within MIT1002_00509at 552.185 kb on + strand, within MIT1002_00509at 552.242 kb on + strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.257 kb on + strand, within MIT1002_00509at 552.265 kb on - strand, within MIT1002_00509at 552.273 kb on - strand, within MIT1002_00509at 552.301 kb on + strandat 552.309 kb on - strandat 552.309 kb on - strandat 552.309 kb on - strandat 552.318 kb on - strandat 552.323 kb on + strandat 552.356 kb on + strandat 552.363 kb on - strandat 552.423 kb on + strandat 552.469 kb on - strand, within MIT1002_00510at 552.510 kb on - strand, within MIT1002_00510at 552.515 kb on + strand, within MIT1002_00510at 552.515 kb on - strand, within MIT1002_00510at 552.521 kb on + strand, within MIT1002_00510at 552.537 kb on - strand, within MIT1002_00510at 552.561 kb on - strand, within MIT1002_00510at 552.685 kb on - strand, within MIT1002_00510at 552.685 kb on - strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.706 kb on + strand, within MIT1002_00510at 552.714 kb on - strand, within MIT1002_00510at 552.774 kb on + strand, within MIT1002_00510at 552.814 kb on - strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.881 kb on - strand, within MIT1002_00510at 552.886 kb on - strand, within MIT1002_00510at 552.898 kb on + strand, within MIT1002_00510at 552.903 kb on + strand, within MIT1002_00510at 552.923 kb on + strand, within MIT1002_00510at 552.930 kb on + strand, within MIT1002_00510at 552.931 kb on - strand, within MIT1002_00510at 552.931 kb on - strand, within MIT1002_00510at 552.931 kb on - strand, within MIT1002_00510at 552.938 kb on - strand, within MIT1002_00510at 552.938 kb on - strand, within MIT1002_00510at 552.971 kb on - strand, within MIT1002_00510at 552.982 kb on + strand, within MIT1002_00510at 553.209 kb on + strandat 553.239 kb on + strandat 553.247 kb on - strandat 553.247 kb on - strandat 553.247 kb on - strandat 553.247 kb on - strandat 553.249 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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551,838 - -0.9
551,845 + -1.1
551,935 + MIT1002_00509 0.24 -0.4
551,948 + MIT1002_00509 0.26 +0.8
551,973 + MIT1002_00509 0.31 +1.2
551,973 + MIT1002_00509 0.31 +1.4
551,997 + MIT1002_00509 0.35 +0.2
552,011 - MIT1002_00509 0.38 +1.5
552,022 - MIT1002_00509 0.40 +0.8
552,066 + MIT1002_00509 0.48 +1.9
552,073 + MIT1002_00509 0.49 +1.4
552,081 - MIT1002_00509 0.51 -0.4
552,086 + MIT1002_00509 0.52 -2.4
552,185 + MIT1002_00509 0.70 -1.4
552,242 + MIT1002_00509 0.80 +0.4
552,250 - MIT1002_00509 0.82 +1.3
552,250 - MIT1002_00509 0.82 +1.4
552,250 - MIT1002_00509 0.82 -0.9
552,250 - MIT1002_00509 0.82 -0.3
552,257 + MIT1002_00509 0.83 -0.0
552,265 - MIT1002_00509 0.85 +0.1
552,273 - MIT1002_00509 0.86 -1.7
552,301 + +1.2
552,309 - -0.8
552,309 - -1.6
552,309 - -2.0
552,318 - -0.9
552,323 + +1.6
552,356 + +1.1
552,363 - -0.1
552,423 + +0.6
552,469 - MIT1002_00510 0.16 +3.0
552,510 - MIT1002_00510 0.21 -1.1
552,515 + MIT1002_00510 0.21 +0.7
552,515 - MIT1002_00510 0.21 +0.6
552,521 + MIT1002_00510 0.22 +0.9
552,537 - MIT1002_00510 0.24 -1.6
552,561 - MIT1002_00510 0.27 +1.5
552,685 - MIT1002_00510 0.43 +1.8
552,685 - MIT1002_00510 0.43 -2.3
552,705 + MIT1002_00510 0.46 -0.9
552,705 + MIT1002_00510 0.46 -1.4
552,705 + MIT1002_00510 0.46 +0.1
552,705 + MIT1002_00510 0.46 +0.5
552,705 + MIT1002_00510 0.46 -1.2
552,706 + MIT1002_00510 0.46 -1.9
552,714 - MIT1002_00510 0.47 -0.8
552,774 + MIT1002_00510 0.55 -1.5
552,814 - MIT1002_00510 0.60 -0.5
552,841 + MIT1002_00510 0.63 -2.5
552,841 + MIT1002_00510 0.63 +0.6
552,841 + MIT1002_00510 0.63 -1.6
552,841 + MIT1002_00510 0.63 +0.5
552,841 + MIT1002_00510 0.63 +0.6
552,849 - MIT1002_00510 0.64 +1.6
552,849 - MIT1002_00510 0.64 -0.7
552,849 - MIT1002_00510 0.64 +1.8
552,849 - MIT1002_00510 0.64 +0.4
552,881 - MIT1002_00510 0.69 -0.2
552,886 - MIT1002_00510 0.69 -0.1
552,898 + MIT1002_00510 0.71 -1.5
552,903 + MIT1002_00510 0.71 -0.1
552,923 + MIT1002_00510 0.74 -1.6
552,930 + MIT1002_00510 0.75 +0.9
552,931 - MIT1002_00510 0.75 -0.7
552,931 - MIT1002_00510 0.75 -1.2
552,931 - MIT1002_00510 0.75 +0.2
552,938 - MIT1002_00510 0.76 +0.4
552,938 - MIT1002_00510 0.76 +1.0
552,971 - MIT1002_00510 0.80 -2.8
552,982 + MIT1002_00510 0.82 +0.8
553,209 + +1.9
553,239 + +1.3
553,247 - +0.7
553,247 - +0.2
553,247 - +0.3
553,247 - +0.4
553,249 + +0.4

Or see this region's nucleotide sequence