Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00495 and MIT1002_00496 are separated by 86 nucleotides MIT1002_00496 and MIT1002_00497 are separated by 101 nucleotides MIT1002_00497 and MIT1002_00498 are separated by 53 nucleotides MIT1002_00498 and MIT1002_00499 are separated by 613 nucleotides
MIT1002_00495: MIT1002_00495 - Putative ribosome biogenesis GTPase RsgA, at 538,722 to 539,765
_00495
MIT1002_00496: MIT1002_00496 - Oligoribonuclease, at 539,852 to 540,397
_00496
MIT1002_00497: MIT1002_00497 - tRNA-Gly, at 540,499 to 540,574
_00497
MIT1002_00498: MIT1002_00498 - tRNA-Gly, at 540,628 to 540,703
_00498
MIT1002_00499: MIT1002_00499 - Colicin I receptor precursor, at 541,317 to 543,788
_00499
Position (kb) 540
541 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 540.657 kb on - strand, within MIT1002_00498 at 540.658 kb on - strand, within MIT1002_00498 at 540.757 kb on + strand at 540.763 kb on - strand at 540.763 kb on - strand at 540.765 kb on + strand at 540.772 kb on + strand at 541.138 kb on + strand at 541.138 kb on + strand at 541.145 kb on + strand at 541.146 kb on - strand at 541.162 kb on - strand at 541.284 kb on - strand at 541.353 kb on + strand at 541.373 kb on - strand at 541.497 kb on + strand at 541.497 kb on + strand at 541.504 kb on + strand at 541.504 kb on + strand at 541.505 kb on - strand at 541.512 kb on - strand at 541.513 kb on + strand at 541.581 kb on + strand, within MIT1002_00499 at 541.581 kb on + strand, within MIT1002_00499 at 541.589 kb on - strand, within MIT1002_00499 at 541.656 kb on - strand, within MIT1002_00499
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 540,657 - MIT1002_00498 0.38 -1.4 540,658 - MIT1002_00498 0.39 -1.8 540,757 + +0.3 540,763 - -1.1 540,763 - -0.7 540,765 + -0.0 540,772 + -2.2 541,138 + +0.1 541,138 + -0.3 541,145 + -0.4 541,146 - -0.6 541,162 - -0.2 541,284 - +0.4 541,353 + +2.0 541,373 - +0.1 541,497 + +1.6 541,497 + -0.0 541,504 + -0.0 541,504 + -2.1 541,505 - -0.4 541,512 - +0.5 541,513 + -1.8 541,581 + MIT1002_00499 0.11 +0.5 541,581 + MIT1002_00499 0.11 +2.9 541,589 - MIT1002_00499 0.11 -1.5 541,656 - MIT1002_00499 0.14 +1.4
Or see this region's nucleotide sequence