Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00416

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00415 and MIT1002_00416 are separated by 242 nucleotidesMIT1002_00416 and MIT1002_00417 are separated by 32 nucleotides MIT1002_00415: MIT1002_00415 - hypothetical protein, at 447,999 to 448,853 _00415 MIT1002_00416: MIT1002_00416 - Nitrogen regulatory protein P-II 2, at 449,096 to 449,434 _00416 MIT1002_00417: MIT1002_00417 - Ammonia transporter, at 449,467 to 450,714 _00417 Position (kb) 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 448.156 kb on - strand, within MIT1002_00415at 448.205 kb on + strand, within MIT1002_00415at 448.213 kb on - strand, within MIT1002_00415at 448.255 kb on - strand, within MIT1002_00415at 448.288 kb on + strand, within MIT1002_00415at 448.290 kb on + strand, within MIT1002_00415at 448.290 kb on + strand, within MIT1002_00415at 448.290 kb on + strand, within MIT1002_00415at 448.363 kb on + strand, within MIT1002_00415at 448.375 kb on + strand, within MIT1002_00415at 448.383 kb on - strand, within MIT1002_00415at 448.383 kb on - strand, within MIT1002_00415at 448.412 kb on - strand, within MIT1002_00415at 448.512 kb on - strand, within MIT1002_00415at 448.569 kb on - strand, within MIT1002_00415at 448.569 kb on - strand, within MIT1002_00415at 448.574 kb on - strand, within MIT1002_00415at 448.579 kb on + strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.586 kb on + strand, within MIT1002_00415at 448.678 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on - strand, within MIT1002_00415at 448.709 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.766 kb on + strand, within MIT1002_00415at 448.766 kb on + strand, within MIT1002_00415at 448.774 kb on - strandat 448.779 kb on - strandat 448.821 kb on + strandat 448.826 kb on - strandat 448.878 kb on + strandat 448.878 kb on + strandat 448.878 kb on + strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.896 kb on + strandat 448.937 kb on + strandat 449.124 kb on - strandat 449.133 kb on - strand, within MIT1002_00416at 449.192 kb on + strand, within MIT1002_00416at 449.207 kb on - strand, within MIT1002_00416at 449.207 kb on - strand, within MIT1002_00416at 449.322 kb on - strand, within MIT1002_00416at 449.379 kb on + strand, within MIT1002_00416at 449.379 kb on + strand, within MIT1002_00416at 449.379 kb on + strand, within MIT1002_00416at 449.380 kb on - strand, within MIT1002_00416at 449.387 kb on - strand, within MIT1002_00416at 449.393 kb on + strand, within MIT1002_00416at 449.429 kb on + strandat 449.429 kb on + strandat 449.429 kb on + strandat 449.437 kb on - strandat 449.532 kb on + strandat 449.535 kb on - strandat 449.570 kb on - strandat 449.572 kb on + strandat 449.572 kb on + strandat 449.572 kb on + strandat 449.572 kb on + strandat 449.580 kb on - strandat 449.580 kb on - strandat 449.580 kb on - strandat 449.625 kb on + strand, within MIT1002_00417at 449.642 kb on - strand, within MIT1002_00417at 449.642 kb on - strand, within MIT1002_00417at 449.644 kb on + strand, within MIT1002_00417at 449.671 kb on + strand, within MIT1002_00417at 449.731 kb on - strand, within MIT1002_00417at 449.793 kb on - strand, within MIT1002_00417at 449.852 kb on - strand, within MIT1002_00417at 449.854 kb on + strand, within MIT1002_00417at 449.889 kb on - strand, within MIT1002_00417at 449.905 kb on + strand, within MIT1002_00417at 449.940 kb on + strand, within MIT1002_00417at 449.948 kb on - strand, within MIT1002_00417at 449.989 kb on + strand, within MIT1002_00417at 450.031 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.074 kb on - strand, within MIT1002_00417at 450.102 kb on - strand, within MIT1002_00417at 450.127 kb on - strand, within MIT1002_00417at 450.140 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.263 kb on - strand, within MIT1002_00417at 450.297 kb on - strand, within MIT1002_00417at 450.298 kb on - strand, within MIT1002_00417at 450.303 kb on + strand, within MIT1002_00417at 450.311 kb on - strand, within MIT1002_00417at 450.353 kb on - strand, within MIT1002_00417at 450.354 kb on + strand, within MIT1002_00417at 450.362 kb on - strand, within MIT1002_00417at 450.376 kb on - strand, within MIT1002_00417at 450.421 kb on + strand, within MIT1002_00417at 450.432 kb on + strand, within MIT1002_00417

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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448,156 - MIT1002_00415 0.18 +0.2
448,205 + MIT1002_00415 0.24 -1.6
448,213 - MIT1002_00415 0.25 +1.6
448,255 - MIT1002_00415 0.30 -0.5
448,288 + MIT1002_00415 0.34 +0.3
448,290 + MIT1002_00415 0.34 +1.1
448,290 + MIT1002_00415 0.34 -1.0
448,290 + MIT1002_00415 0.34 +1.2
448,363 + MIT1002_00415 0.43 +0.9
448,375 + MIT1002_00415 0.44 +2.2
448,383 - MIT1002_00415 0.45 -0.9
448,383 - MIT1002_00415 0.45 -1.5
448,412 - MIT1002_00415 0.48 +0.5
448,512 - MIT1002_00415 0.60 -0.4
448,569 - MIT1002_00415 0.67 +1.3
448,569 - MIT1002_00415 0.67 -0.1
448,574 - MIT1002_00415 0.67 +0.9
448,579 + MIT1002_00415 0.68 -1.0
448,579 - MIT1002_00415 0.68 +1.0
448,579 - MIT1002_00415 0.68 -0.4
448,579 - MIT1002_00415 0.68 +2.1
448,586 + MIT1002_00415 0.69 +0.3
448,678 + MIT1002_00415 0.79 -1.2
448,706 + MIT1002_00415 0.83 +0.5
448,706 + MIT1002_00415 0.83 -0.1
448,706 + MIT1002_00415 0.83 +1.2
448,706 - MIT1002_00415 0.83 -1.1
448,709 - MIT1002_00415 0.83 +0.4
448,714 - MIT1002_00415 0.84 +0.3
448,714 - MIT1002_00415 0.84 -0.2
448,714 - MIT1002_00415 0.84 -1.3
448,714 - MIT1002_00415 0.84 -0.4
448,714 - MIT1002_00415 0.84 +2.9
448,766 + MIT1002_00415 0.90 +1.8
448,766 + MIT1002_00415 0.90 +0.4
448,774 - +0.6
448,779 - +1.2
448,821 + -0.1
448,826 - +0.1
448,878 + +0.4
448,878 + +0.0
448,878 + +0.1
448,886 - +0.9
448,886 - +0.1
448,886 - +0.1
448,886 - +2.4
448,896 + +1.1
448,937 + -3.0
449,124 - +0.6
449,133 - MIT1002_00416 0.11 -0.2
449,192 + MIT1002_00416 0.28 -0.5
449,207 - MIT1002_00416 0.33 +1.6
449,207 - MIT1002_00416 0.33 -0.9
449,322 - MIT1002_00416 0.67 -0.8
449,379 + MIT1002_00416 0.83 +1.4
449,379 + MIT1002_00416 0.83 +1.1
449,379 + MIT1002_00416 0.83 -0.7
449,380 - MIT1002_00416 0.84 -2.6
449,387 - MIT1002_00416 0.86 -0.6
449,393 + MIT1002_00416 0.88 -0.1
449,429 + -0.1
449,429 + -0.7
449,429 + +1.0
449,437 - -0.7
449,532 + -0.9
449,535 - +0.3
449,570 - -0.7
449,572 + -1.4
449,572 + +0.4
449,572 + +0.1
449,572 + -2.2
449,580 - +0.3
449,580 - -0.9
449,580 - -0.5
449,625 + MIT1002_00417 0.13 -0.8
449,642 - MIT1002_00417 0.14 -2.4
449,642 - MIT1002_00417 0.14 -0.3
449,644 + MIT1002_00417 0.14 -2.2
449,671 + MIT1002_00417 0.16 -1.8
449,731 - MIT1002_00417 0.21 -1.0
449,793 - MIT1002_00417 0.26 +1.6
449,852 - MIT1002_00417 0.31 -0.2
449,854 + MIT1002_00417 0.31 -1.2
449,889 - MIT1002_00417 0.34 +1.7
449,905 + MIT1002_00417 0.35 -0.2
449,940 + MIT1002_00417 0.38 +2.7
449,948 - MIT1002_00417 0.39 -1.3
449,989 + MIT1002_00417 0.42 -0.2
450,031 - MIT1002_00417 0.45 -0.4
450,057 - MIT1002_00417 0.47 +0.1
450,057 - MIT1002_00417 0.47 +0.9
450,074 - MIT1002_00417 0.49 +0.5
450,102 - MIT1002_00417 0.51 +1.2
450,127 - MIT1002_00417 0.53 +0.1
450,140 + MIT1002_00417 0.54 +0.9
450,158 + MIT1002_00417 0.55 -0.3
450,158 + MIT1002_00417 0.55 +2.6
450,163 + MIT1002_00417 0.56 +1.2
450,163 + MIT1002_00417 0.56 +2.1
450,163 + MIT1002_00417 0.56 +0.4
450,163 + MIT1002_00417 0.56 -2.9
450,171 - MIT1002_00417 0.56 -2.0
450,171 - MIT1002_00417 0.56 +0.3
450,171 - MIT1002_00417 0.56 -2.4
450,171 - MIT1002_00417 0.56 -0.4
450,263 - MIT1002_00417 0.64 -1.1
450,297 - MIT1002_00417 0.67 -0.7
450,298 - MIT1002_00417 0.67 +0.6
450,303 + MIT1002_00417 0.67 -0.2
450,311 - MIT1002_00417 0.68 -2.4
450,353 - MIT1002_00417 0.71 -1.4
450,354 + MIT1002_00417 0.71 -1.8
450,362 - MIT1002_00417 0.72 -0.4
450,376 - MIT1002_00417 0.73 +1.0
450,421 + MIT1002_00417 0.76 +0.2
450,432 + MIT1002_00417 0.77 -2.1

Or see this region's nucleotide sequence