Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00355

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00354 and MIT1002_00355 are separated by 157 nucleotidesMIT1002_00355 and MIT1002_00356 are separated by 296 nucleotidesMIT1002_00356 and MIT1002_00357 are separated by 92 nucleotides MIT1002_00354: MIT1002_00354 - Diguanylate cyclase DosC, at 380,872 to 382,671 _00354 MIT1002_00355: MIT1002_00355 - putative permease, DMT superfamily, at 382,829 to 383,722 _00355 MIT1002_00356: MIT1002_00356 - phosphoglycolate phosphatase, at 384,019 to 384,522 _00356 MIT1002_00357: MIT1002_00357 - hypothetical protein, at 384,615 to 385,502 _00357 Position (kb) 382 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 381.856 kb on + strand, within MIT1002_00354at 381.861 kb on + strand, within MIT1002_00354at 381.869 kb on - strand, within MIT1002_00354at 381.956 kb on - strand, within MIT1002_00354at 381.961 kb on + strand, within MIT1002_00354at 381.969 kb on - strand, within MIT1002_00354at 381.972 kb on + strand, within MIT1002_00354at 381.999 kb on + strand, within MIT1002_00354at 381.999 kb on + strand, within MIT1002_00354at 382.000 kb on - strand, within MIT1002_00354at 382.064 kb on + strand, within MIT1002_00354at 382.085 kb on + strand, within MIT1002_00354at 382.151 kb on + strand, within MIT1002_00354at 382.153 kb on - strand, within MIT1002_00354at 382.159 kb on - strand, within MIT1002_00354at 382.159 kb on - strand, within MIT1002_00354at 382.169 kb on - strand, within MIT1002_00354at 382.221 kb on + strand, within MIT1002_00354at 382.262 kb on + strand, within MIT1002_00354at 382.270 kb on - strand, within MIT1002_00354at 382.405 kb on - strand, within MIT1002_00354at 382.442 kb on + strand, within MIT1002_00354at 382.521 kb on - strandat 382.539 kb on + strandat 382.547 kb on - strandat 382.549 kb on + strandat 382.549 kb on + strandat 382.597 kb on - strandat 382.654 kb on + strandat 382.660 kb on + strandat 382.661 kb on - strandat 382.668 kb on - strandat 382.668 kb on - strandat 382.668 kb on - strandat 382.722 kb on + strandat 382.722 kb on + strandat 382.744 kb on - strandat 382.801 kb on + strandat 382.866 kb on + strandat 382.879 kb on - strandat 382.889 kb on + strandat 382.897 kb on - strandat 382.897 kb on - strandat 382.899 kb on - strandat 382.935 kb on + strand, within MIT1002_00355at 382.969 kb on + strand, within MIT1002_00355at 382.970 kb on + strand, within MIT1002_00355at 382.970 kb on + strand, within MIT1002_00355at 382.978 kb on - strand, within MIT1002_00355at 383.123 kb on + strand, within MIT1002_00355at 383.296 kb on + strand, within MIT1002_00355at 383.301 kb on - strand, within MIT1002_00355at 383.317 kb on + strand, within MIT1002_00355at 383.325 kb on + strand, within MIT1002_00355at 383.325 kb on + strand, within MIT1002_00355at 383.339 kb on + strand, within MIT1002_00355at 383.347 kb on - strand, within MIT1002_00355at 383.350 kb on + strand, within MIT1002_00355at 383.355 kb on - strand, within MIT1002_00355at 383.389 kb on - strand, within MIT1002_00355at 383.417 kb on + strand, within MIT1002_00355at 383.423 kb on - strand, within MIT1002_00355at 383.446 kb on + strand, within MIT1002_00355at 383.461 kb on + strand, within MIT1002_00355at 383.577 kb on + strand, within MIT1002_00355at 383.585 kb on - strand, within MIT1002_00355at 383.671 kb on - strandat 383.671 kb on - strandat 383.692 kb on + strandat 383.699 kb on + strandat 383.699 kb on + strandat 383.702 kb on - strandat 383.705 kb on - strandat 383.707 kb on - strandat 383.707 kb on - strandat 383.802 kb on + strandat 383.803 kb on - strandat 383.810 kb on - strandat 383.810 kb on - strandat 383.812 kb on + strandat 383.866 kb on - strandat 383.880 kb on + strandat 383.880 kb on + strandat 383.928 kb on + strandat 383.933 kb on + strandat 383.933 kb on + strandat 384.008 kb on + strandat 384.099 kb on - strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.111 kb on + strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.133 kb on + strand, within MIT1002_00356at 384.141 kb on - strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.231 kb on + strand, within MIT1002_00356at 384.276 kb on + strand, within MIT1002_00356at 384.277 kb on + strand, within MIT1002_00356at 384.323 kb on + strand, within MIT1002_00356at 384.323 kb on + strand, within MIT1002_00356at 384.323 kb on + strand, within MIT1002_00356at 384.334 kb on + strand, within MIT1002_00356at 384.342 kb on + strand, within MIT1002_00356at 384.384 kb on + strand, within MIT1002_00356at 384.392 kb on - strand, within MIT1002_00356at 384.401 kb on + strand, within MIT1002_00356at 384.430 kb on - strand, within MIT1002_00356at 384.457 kb on - strand, within MIT1002_00356at 384.526 kb on + strandat 384.579 kb on - strandat 384.650 kb on - strandat 384.661 kb on - strandat 384.661 kb on - strandat 384.682 kb on + strandat 384.695 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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381,856 + MIT1002_00354 0.55 -2.8
381,861 + MIT1002_00354 0.55 +0.4
381,869 - MIT1002_00354 0.55 -0.2
381,956 - MIT1002_00354 0.60 -2.0
381,961 + MIT1002_00354 0.60 -0.4
381,969 - MIT1002_00354 0.61 -1.0
381,972 + MIT1002_00354 0.61 -0.2
381,999 + MIT1002_00354 0.63 +1.1
381,999 + MIT1002_00354 0.63 -0.5
382,000 - MIT1002_00354 0.63 +0.3
382,064 + MIT1002_00354 0.66 +0.4
382,085 + MIT1002_00354 0.67 +1.0
382,151 + MIT1002_00354 0.71 +0.9
382,153 - MIT1002_00354 0.71 +0.5
382,159 - MIT1002_00354 0.71 +2.3
382,159 - MIT1002_00354 0.71 -0.5
382,169 - MIT1002_00354 0.72 +0.1
382,221 + MIT1002_00354 0.75 +1.2
382,262 + MIT1002_00354 0.77 +0.6
382,270 - MIT1002_00354 0.78 -0.1
382,405 - MIT1002_00354 0.85 +0.4
382,442 + MIT1002_00354 0.87 +0.3
382,521 - -1.8
382,539 + -0.1
382,547 - -0.3
382,549 + +0.4
382,549 + -0.3
382,597 - -0.1
382,654 + +0.9
382,660 + +1.0
382,661 - +0.6
382,668 - +0.4
382,668 - +0.9
382,668 - -0.9
382,722 + +0.3
382,722 + +0.6
382,744 - +0.6
382,801 + +0.6
382,866 + +0.3
382,879 - -1.5
382,889 + +1.2
382,897 - -1.0
382,897 - +0.7
382,899 - +0.6
382,935 + MIT1002_00355 0.12 +0.9
382,969 + MIT1002_00355 0.16 -1.0
382,970 + MIT1002_00355 0.16 +0.2
382,970 + MIT1002_00355 0.16 +0.7
382,978 - MIT1002_00355 0.17 +0.8
383,123 + MIT1002_00355 0.33 +1.0
383,296 + MIT1002_00355 0.52 -0.1
383,301 - MIT1002_00355 0.53 -0.3
383,317 + MIT1002_00355 0.55 +0.4
383,325 + MIT1002_00355 0.55 -0.3
383,325 + MIT1002_00355 0.55 -1.0
383,339 + MIT1002_00355 0.57 -0.7
383,347 - MIT1002_00355 0.58 +0.2
383,350 + MIT1002_00355 0.58 +0.1
383,355 - MIT1002_00355 0.59 -0.9
383,389 - MIT1002_00355 0.63 +0.7
383,417 + MIT1002_00355 0.66 -2.3
383,423 - MIT1002_00355 0.66 -1.3
383,446 + MIT1002_00355 0.69 -1.7
383,461 + MIT1002_00355 0.71 -0.3
383,577 + MIT1002_00355 0.84 -0.1
383,585 - MIT1002_00355 0.85 -0.2
383,671 - -0.9
383,671 - +0.3
383,692 + -0.0
383,699 + -0.5
383,699 + +0.5
383,702 - -1.4
383,705 - +1.4
383,707 - -0.4
383,707 - -1.9
383,802 + +0.4
383,803 - -0.4
383,810 - -1.2
383,810 - +1.1
383,812 + -1.6
383,866 - -0.2
383,880 + -0.3
383,880 + -1.9
383,928 + +0.8
383,933 + +0.7
383,933 + -0.4
384,008 + +0.9
384,099 - MIT1002_00356 0.16 +0.5
384,106 + MIT1002_00356 0.17 +1.1
384,106 + MIT1002_00356 0.17 -0.4
384,106 + MIT1002_00356 0.17 +0.4
384,106 + MIT1002_00356 0.17 -0.5
384,106 + MIT1002_00356 0.17 -0.0
384,106 + MIT1002_00356 0.17 +0.1
384,106 + MIT1002_00356 0.17 -2.0
384,106 + MIT1002_00356 0.17 -0.2
384,106 + MIT1002_00356 0.17 -0.4
384,106 + MIT1002_00356 0.17 -0.5
384,111 + MIT1002_00356 0.18 +0.2
384,114 - MIT1002_00356 0.19 +0.2
384,114 - MIT1002_00356 0.19 +0.6
384,114 - MIT1002_00356 0.19 -0.0
384,114 - MIT1002_00356 0.19 -1.0
384,114 - MIT1002_00356 0.19 +1.1
384,114 - MIT1002_00356 0.19 +0.2
384,114 - MIT1002_00356 0.19 +0.5
384,114 - MIT1002_00356 0.19 +0.1
384,114 - MIT1002_00356 0.19 +3.5
384,114 - MIT1002_00356 0.19 -1.6
384,133 + MIT1002_00356 0.23 +1.0
384,141 - MIT1002_00356 0.24 -0.1
384,151 + MIT1002_00356 0.26 -0.5
384,151 + MIT1002_00356 0.26 +0.5
384,151 + MIT1002_00356 0.26 +1.4
384,151 + MIT1002_00356 0.26 -0.0
384,151 + MIT1002_00356 0.26 -1.1
384,151 + MIT1002_00356 0.26 -0.3
384,151 + MIT1002_00356 0.26 -0.9
384,159 - MIT1002_00356 0.28 -1.6
384,159 - MIT1002_00356 0.28 +0.3
384,159 - MIT1002_00356 0.28 +1.7
384,159 - MIT1002_00356 0.28 -0.4
384,159 - MIT1002_00356 0.28 -1.1
384,159 - MIT1002_00356 0.28 -2.1
384,159 - MIT1002_00356 0.28 +1.1
384,159 - MIT1002_00356 0.28 +0.1
384,231 + MIT1002_00356 0.42 -1.0
384,276 + MIT1002_00356 0.51 -1.8
384,277 + MIT1002_00356 0.51 -0.0
384,323 + MIT1002_00356 0.60 +0.6
384,323 + MIT1002_00356 0.60 +0.7
384,323 + MIT1002_00356 0.60 -0.9
384,334 + MIT1002_00356 0.62 -0.6
384,342 + MIT1002_00356 0.64 +0.1
384,384 + MIT1002_00356 0.72 +0.8
384,392 - MIT1002_00356 0.74 +0.8
384,401 + MIT1002_00356 0.76 -0.7
384,430 - MIT1002_00356 0.82 +0.7
384,457 - MIT1002_00356 0.87 +0.2
384,526 + +2.2
384,579 - -0.1
384,650 - +0.2
384,661 - -1.1
384,661 - -0.4
384,682 + +0.5
384,695 - +0.1

Or see this region's nucleotide sequence