Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00346 and MIT1002_00347 are separated by 136 nucleotides MIT1002_00347 and MIT1002_00348 are separated by 251 nucleotides
MIT1002_00346: MIT1002_00346 - hypothetical protein, at 371,483 to 371,743
_00346
MIT1002_00347: MIT1002_00347 - 2-haloalkanoic acid dehalogenase, at 371,880 to 372,551
_00347
MIT1002_00348: MIT1002_00348 - hypothetical protein, at 372,803 to 374,131
_00348
Position (kb) 371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 370.891 kb on - strand at 370.908 kb on - strand at 370.923 kb on + strand at 370.931 kb on - strand at 370.991 kb on - strand at 371.019 kb on + strand at 371.142 kb on - strand at 371.158 kb on + strand at 371.166 kb on - strand at 371.166 kb on - strand at 371.168 kb on + strand at 371.189 kb on + strand at 371.439 kb on + strand at 371.447 kb on - strand at 371.447 kb on - strand at 371.447 kb on - strand at 371.447 kb on - strand at 371.470 kb on + strand at 371.513 kb on + strand, within MIT1002_00346 at 371.513 kb on + strand, within MIT1002_00346 at 371.517 kb on - strand, within MIT1002_00346 at 371.521 kb on - strand, within MIT1002_00346 at 371.612 kb on + strand, within MIT1002_00346 at 371.636 kb on + strand, within MIT1002_00346 at 371.658 kb on - strand, within MIT1002_00346 at 371.906 kb on - strand at 371.970 kb on + strand, within MIT1002_00347 at 371.985 kb on + strand, within MIT1002_00347 at 371.992 kb on + strand, within MIT1002_00347 at 372.009 kb on + strand, within MIT1002_00347 at 372.010 kb on + strand, within MIT1002_00347 at 372.017 kb on - strand, within MIT1002_00347 at 372.066 kb on - strand, within MIT1002_00347 at 372.066 kb on - strand, within MIT1002_00347 at 372.081 kb on + strand, within MIT1002_00347 at 372.084 kb on - strand, within MIT1002_00347 at 372.084 kb on - strand, within MIT1002_00347 at 372.089 kb on - strand, within MIT1002_00347 at 372.099 kb on + strand, within MIT1002_00347 at 372.216 kb on + strand, within MIT1002_00347 at 372.247 kb on - strand, within MIT1002_00347 at 372.275 kb on + strand, within MIT1002_00347 at 372.280 kb on + strand, within MIT1002_00347 at 372.323 kb on + strand, within MIT1002_00347 at 372.346 kb on + strand, within MIT1002_00347 at 372.407 kb on + strand, within MIT1002_00347 at 372.415 kb on - strand, within MIT1002_00347 at 372.438 kb on + strand, within MIT1002_00347 at 372.444 kb on + strand, within MIT1002_00347 at 372.444 kb on + strand, within MIT1002_00347 at 372.446 kb on - strand, within MIT1002_00347 at 372.452 kb on - strand, within MIT1002_00347 at 372.454 kb on - strand, within MIT1002_00347 at 372.465 kb on + strand, within MIT1002_00347 at 372.512 kb on - strand at 372.559 kb on - strand at 372.611 kb on + strand at 372.611 kb on + strand at 372.611 kb on + strand at 372.621 kb on + strand at 372.659 kb on - strand at 372.679 kb on - strand at 372.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 370,891 - -2.8 370,908 - +0.6 370,923 + -0.1 370,931 - +2.0 370,991 - -0.8 371,019 + +0.1 371,142 - -0.4 371,158 + -0.9 371,166 - +1.6 371,166 - +0.2 371,168 + +0.4 371,189 + +0.6 371,439 + +0.8 371,447 - -1.0 371,447 - +0.4 371,447 - +0.4 371,447 - -0.1 371,470 + -0.6 371,513 + MIT1002_00346 0.11 +0.1 371,513 + MIT1002_00346 0.11 +0.6 371,517 - MIT1002_00346 0.13 -0.1 371,521 - MIT1002_00346 0.15 -0.3 371,612 + MIT1002_00346 0.49 +1.6 371,636 + MIT1002_00346 0.59 -0.4 371,658 - MIT1002_00346 0.67 +1.6 371,906 - +0.6 371,970 + MIT1002_00347 0.13 +0.1 371,985 + MIT1002_00347 0.16 -0.6 371,992 + MIT1002_00347 0.17 +0.7 372,009 + MIT1002_00347 0.19 -0.3 372,010 + MIT1002_00347 0.19 -0.5 372,017 - MIT1002_00347 0.20 -1.2 372,066 - MIT1002_00347 0.28 +1.3 372,066 - MIT1002_00347 0.28 -3.0 372,081 + MIT1002_00347 0.30 +0.9 372,084 - MIT1002_00347 0.30 -2.6 372,084 - MIT1002_00347 0.30 -0.8 372,089 - MIT1002_00347 0.31 -0.3 372,099 + MIT1002_00347 0.33 +0.4 372,216 + MIT1002_00347 0.50 -0.1 372,247 - MIT1002_00347 0.55 +2.2 372,275 + MIT1002_00347 0.59 +0.3 372,280 + MIT1002_00347 0.60 -0.3 372,323 + MIT1002_00347 0.66 -0.5 372,346 + MIT1002_00347 0.69 +1.0 372,407 + MIT1002_00347 0.78 +1.1 372,415 - MIT1002_00347 0.80 -1.3 372,438 + MIT1002_00347 0.83 +0.2 372,444 + MIT1002_00347 0.84 +0.3 372,444 + MIT1002_00347 0.84 -0.6 372,446 - MIT1002_00347 0.84 +0.3 372,452 - MIT1002_00347 0.85 +0.5 372,454 - MIT1002_00347 0.85 +2.0 372,465 + MIT1002_00347 0.87 +0.6 372,512 - -0.7 372,559 - +0.3 372,611 + -0.5 372,611 + +0.9 372,611 + +0.6 372,621 + +1.5 372,659 - +0.2 372,679 - +0.1 372,798 - +0.8
Or see this region's nucleotide sequence