Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00344

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00343 and MIT1002_00344 are separated by 623 nucleotidesMIT1002_00344 and MIT1002_00345 are separated by 462 nucleotides MIT1002_00343: MIT1002_00343 - Ion channel, at 367,285 to 367,680 _00343 MIT1002_00344: MIT1002_00344 - tyrosine recombinase XerC, at 368,304 to 369,593 _00344 MIT1002_00345: MIT1002_00345 - hypothetical protein, at 370,056 to 370,565 _00345 Position (kb) 368 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 367.318 kb on + strandat 367.318 kb on + strandat 367.326 kb on - strand, within MIT1002_00343at 367.326 kb on - strand, within MIT1002_00343at 367.328 kb on + strand, within MIT1002_00343at 367.328 kb on + strand, within MIT1002_00343at 367.328 kb on - strand, within MIT1002_00343at 367.333 kb on + strand, within MIT1002_00343at 367.336 kb on - strand, within MIT1002_00343at 367.336 kb on - strand, within MIT1002_00343at 367.336 kb on - strand, within MIT1002_00343at 367.381 kb on + strand, within MIT1002_00343at 367.383 kb on + strand, within MIT1002_00343at 367.383 kb on + strand, within MIT1002_00343at 367.389 kb on - strand, within MIT1002_00343at 367.391 kb on - strand, within MIT1002_00343at 367.400 kb on - strand, within MIT1002_00343at 367.577 kb on + strand, within MIT1002_00343at 367.654 kb on - strandat 367.703 kb on + strandat 367.703 kb on + strandat 367.703 kb on + strandat 367.703 kb on - strandat 367.704 kb on + strandat 367.711 kb on - strandat 367.711 kb on - strandat 367.711 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.786 kb on + strandat 367.796 kb on + strandat 367.796 kb on + strandat 367.796 kb on + strandat 367.808 kb on + strandat 367.825 kb on + strandat 367.835 kb on - strandat 367.863 kb on + strandat 367.863 kb on + strandat 367.863 kb on + strandat 367.871 kb on - strandat 367.954 kb on + strandat 367.963 kb on - strandat 368.060 kb on - strandat 368.067 kb on + strandat 368.075 kb on - strandat 368.075 kb on - strandat 368.186 kb on + strandat 368.194 kb on - strandat 368.261 kb on + strandat 368.291 kb on + strandat 368.304 kb on - strandat 368.328 kb on - strandat 368.330 kb on + strandat 368.330 kb on + strandat 368.338 kb on - strandat 368.384 kb on + strandat 368.385 kb on + strandat 368.475 kb on + strand, within MIT1002_00344at 368.476 kb on + strand, within MIT1002_00344at 368.476 kb on + strand, within MIT1002_00344at 368.476 kb on + strand, within MIT1002_00344at 368.476 kb on + strand, within MIT1002_00344at 368.484 kb on - strand, within MIT1002_00344at 368.484 kb on - strand, within MIT1002_00344at 368.484 kb on - strand, within MIT1002_00344at 368.484 kb on - strand, within MIT1002_00344at 368.484 kb on - strand, within MIT1002_00344at 368.484 kb on - strand, within MIT1002_00344at 368.573 kb on + strand, within MIT1002_00344at 368.573 kb on + strand, within MIT1002_00344at 368.581 kb on + strand, within MIT1002_00344at 368.599 kb on + strand, within MIT1002_00344at 368.677 kb on - strand, within MIT1002_00344at 368.677 kb on - strand, within MIT1002_00344at 368.699 kb on + strand, within MIT1002_00344at 368.712 kb on - strand, within MIT1002_00344at 368.770 kb on + strand, within MIT1002_00344at 368.778 kb on - strand, within MIT1002_00344at 368.797 kb on + strand, within MIT1002_00344at 369.002 kb on + strand, within MIT1002_00344at 369.017 kb on - strand, within MIT1002_00344at 369.039 kb on + strand, within MIT1002_00344at 369.048 kb on + strand, within MIT1002_00344at 369.152 kb on + strand, within MIT1002_00344at 369.290 kb on + strand, within MIT1002_00344at 369.290 kb on + strand, within MIT1002_00344at 369.329 kb on + strand, within MIT1002_00344at 369.335 kb on + strand, within MIT1002_00344at 369.354 kb on + strand, within MIT1002_00344at 369.525 kb on - strandat 369.525 kb on - strandat 369.529 kb on + strandat 369.529 kb on + strandat 369.529 kb on + strandat 369.529 kb on + strandat 369.529 kb on + strandat 369.537 kb on - strandat 369.537 kb on - strandat 369.860 kb on - strandat 369.874 kb on - strandat 369.917 kb on + strandat 370.003 kb on - strandat 370.003 kb on - strandat 370.005 kb on + strandat 370.015 kb on - strandat 370.237 kb on + strand, within MIT1002_00345at 370.237 kb on + strand, within MIT1002_00345at 370.245 kb on - strand, within MIT1002_00345at 370.245 kb on - strand, within MIT1002_00345at 370.249 kb on + strand, within MIT1002_00345at 370.254 kb on + strand, within MIT1002_00345at 370.302 kb on - strand, within MIT1002_00345at 370.302 kb on - strand, within MIT1002_00345at 370.302 kb on - strand, within MIT1002_00345at 370.399 kb on - strand, within MIT1002_00345at 370.452 kb on - strand, within MIT1002_00345at 370.462 kb on - strand, within MIT1002_00345at 370.462 kb on - strand, within MIT1002_00345at 370.462 kb on - strand, within MIT1002_00345at 370.462 kb on - strand, within MIT1002_00345at 370.462 kb on - strand, within MIT1002_00345at 370.475 kb on + strand, within MIT1002_00345at 370.481 kb on + strand, within MIT1002_00345at 370.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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367,318 + -0.1
367,318 + +1.2
367,326 - MIT1002_00343 0.10 -1.7
367,326 - MIT1002_00343 0.10 +1.7
367,328 + MIT1002_00343 0.11 -2.1
367,328 + MIT1002_00343 0.11 -0.1
367,328 - MIT1002_00343 0.11 +0.0
367,333 + MIT1002_00343 0.12 -0.1
367,336 - MIT1002_00343 0.13 +0.8
367,336 - MIT1002_00343 0.13 +0.5
367,336 - MIT1002_00343 0.13 +0.3
367,381 + MIT1002_00343 0.24 -1.2
367,383 + MIT1002_00343 0.25 -1.1
367,383 + MIT1002_00343 0.25 +0.4
367,389 - MIT1002_00343 0.26 +2.2
367,391 - MIT1002_00343 0.27 -1.5
367,400 - MIT1002_00343 0.29 +0.4
367,577 + MIT1002_00343 0.74 -0.2
367,654 - -0.8
367,703 + +0.1
367,703 + +0.6
367,703 + -1.2
367,703 - -0.9
367,704 + +0.0
367,711 - -0.7
367,711 - +2.6
367,711 - +0.6
367,712 - -0.0
367,712 - +1.7
367,712 - +1.6
367,712 - -0.8
367,712 - -0.7
367,786 + +0.9
367,796 + -0.8
367,796 + -1.3
367,796 + -0.3
367,808 + -2.1
367,825 + +1.3
367,835 - +0.7
367,863 + +1.2
367,863 + -0.4
367,863 + +0.5
367,871 - +0.1
367,954 + +2.1
367,963 - -1.3
368,060 - -0.5
368,067 + -1.7
368,075 - +0.9
368,075 - +1.8
368,186 + -0.3
368,194 - -0.7
368,261 + -0.7
368,291 + +0.5
368,304 - -0.1
368,328 - -0.8
368,330 + +2.4
368,330 + +0.2
368,338 - -3.6
368,384 + +0.9
368,385 + -0.8
368,475 + MIT1002_00344 0.13 -0.8
368,476 + MIT1002_00344 0.13 +0.6
368,476 + MIT1002_00344 0.13 -1.3
368,476 + MIT1002_00344 0.13 -0.4
368,476 + MIT1002_00344 0.13 -1.1
368,484 - MIT1002_00344 0.14 -0.4
368,484 - MIT1002_00344 0.14 +0.6
368,484 - MIT1002_00344 0.14 -1.6
368,484 - MIT1002_00344 0.14 -1.3
368,484 - MIT1002_00344 0.14 +0.6
368,484 - MIT1002_00344 0.14 +2.0
368,573 + MIT1002_00344 0.21 +1.6
368,573 + MIT1002_00344 0.21 +1.8
368,581 + MIT1002_00344 0.21 +0.1
368,599 + MIT1002_00344 0.23 -1.5
368,677 - MIT1002_00344 0.29 +0.9
368,677 - MIT1002_00344 0.29 -0.1
368,699 + MIT1002_00344 0.31 -3.6
368,712 - MIT1002_00344 0.32 -0.2
368,770 + MIT1002_00344 0.36 +1.3
368,778 - MIT1002_00344 0.37 +1.8
368,797 + MIT1002_00344 0.38 +0.4
369,002 + MIT1002_00344 0.54 -0.6
369,017 - MIT1002_00344 0.55 -0.8
369,039 + MIT1002_00344 0.57 +0.2
369,048 + MIT1002_00344 0.58 -0.6
369,152 + MIT1002_00344 0.66 +0.2
369,290 + MIT1002_00344 0.76 +2.1
369,290 + MIT1002_00344 0.76 -0.0
369,329 + MIT1002_00344 0.79 +0.3
369,335 + MIT1002_00344 0.80 -0.1
369,354 + MIT1002_00344 0.81 +1.1
369,525 - +0.4
369,525 - -0.6
369,529 + -0.3
369,529 + +0.1
369,529 + +0.7
369,529 + -0.3
369,529 + -0.0
369,537 - -0.5
369,537 - -0.5
369,860 - +0.5
369,874 - +0.7
369,917 + +0.1
370,003 - -0.3
370,003 - +0.1
370,005 + +3.3
370,015 - +1.2
370,237 + MIT1002_00345 0.35 +1.4
370,237 + MIT1002_00345 0.35 -0.2
370,245 - MIT1002_00345 0.37 +2.1
370,245 - MIT1002_00345 0.37 -1.3
370,249 + MIT1002_00345 0.38 -0.8
370,254 + MIT1002_00345 0.39 +0.8
370,302 - MIT1002_00345 0.48 -1.1
370,302 - MIT1002_00345 0.48 -0.3
370,302 - MIT1002_00345 0.48 +0.5
370,399 - MIT1002_00345 0.67 +0.2
370,452 - MIT1002_00345 0.78 -0.1
370,462 - MIT1002_00345 0.80 -0.6
370,462 - MIT1002_00345 0.80 -0.9
370,462 - MIT1002_00345 0.80 -0.3
370,462 - MIT1002_00345 0.80 +1.1
370,462 - MIT1002_00345 0.80 -0.2
370,475 + MIT1002_00345 0.82 -1.3
370,481 + MIT1002_00345 0.83 +1.7
370,541 - -0.5

Or see this region's nucleotide sequence