Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00287 and MIT1002_00288 are separated by 10 nucleotides MIT1002_00288 and MIT1002_00289 are separated by 49 nucleotides MIT1002_00289 and MIT1002_00290 are separated by 75 nucleotides MIT1002_00290 and MIT1002_00291 are separated by 341 nucleotides
MIT1002_00287: MIT1002_00287 - Putative protein-S-isoprenylcysteine methyltransferase, at 311,940 to 312,593
_00287
MIT1002_00288: MIT1002_00288 - hypothetical protein, at 312,604 to 313,056
_00288
MIT1002_00289: MIT1002_00289 - hypothetical protein, at 313,106 to 313,474
_00289
MIT1002_00290: MIT1002_00290 - hypothetical protein, at 313,550 to 313,732
_00290
MIT1002_00291: MIT1002_00291 - Integrase core domain protein, at 314,074 to 314,535
_00291
Position (kb) 313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 312.149 kb on - strand, within MIT1002_00287 at 312.234 kb on + strand, within MIT1002_00287 at 312.242 kb on - strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.387 kb on - strand, within MIT1002_00287 at 312.415 kb on + strand, within MIT1002_00287 at 312.415 kb on + strand, within MIT1002_00287 at 312.423 kb on + strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.494 kb on + strand, within MIT1002_00287 at 312.621 kb on - strand at 312.651 kb on - strand, within MIT1002_00288 at 312.675 kb on - strand, within MIT1002_00288 at 312.712 kb on - strand, within MIT1002_00288 at 312.737 kb on + strand, within MIT1002_00288 at 312.840 kb on - strand, within MIT1002_00288 at 312.865 kb on + strand, within MIT1002_00288 at 312.910 kb on - strand, within MIT1002_00288 at 312.931 kb on - strand, within MIT1002_00288 at 312.931 kb on - strand, within MIT1002_00288 at 312.970 kb on + strand, within MIT1002_00288 at 313.135 kb on - strand at 313.208 kb on - strand, within MIT1002_00289 at 313.278 kb on - strand, within MIT1002_00289 at 313.284 kb on + strand, within MIT1002_00289 at 313.284 kb on + strand, within MIT1002_00289 at 313.292 kb on - strand, within MIT1002_00289 at 313.292 kb on - strand, within MIT1002_00289 at 313.327 kb on + strand, within MIT1002_00289 at 313.428 kb on - strand, within MIT1002_00289 at 313.429 kb on - strand, within MIT1002_00289 at 313.449 kb on + strand at 313.451 kb on - strand at 313.462 kb on - strand at 313.496 kb on + strand at 313.496 kb on + strand at 313.540 kb on + strand at 313.540 kb on + strand at 313.540 kb on + strand at 313.545 kb on + strand at 313.545 kb on + strand at 313.548 kb on + strand at 313.548 kb on - strand at 313.548 kb on - strand at 313.550 kb on + strand at 313.558 kb on - strand at 313.578 kb on + strand, within MIT1002_00290 at 313.578 kb on + strand, within MIT1002_00290 at 313.578 kb on + strand, within MIT1002_00290 at 313.612 kb on - strand, within MIT1002_00290 at 313.620 kb on - strand, within MIT1002_00290 at 313.651 kb on - strand, within MIT1002_00290 at 313.735 kb on - strand at 313.744 kb on + strand at 313.752 kb on - strand at 313.803 kb on + strand at 313.808 kb on + strand at 313.819 kb on - strand at 313.819 kb on - strand at 313.892 kb on - strand at 313.903 kb on + strand at 313.958 kb on + strand at 313.958 kb on + strand at 314.077 kb on + strand at 314.230 kb on - strand, within MIT1002_00291 at 314.255 kb on + strand, within MIT1002_00291 at 314.255 kb on + strand, within MIT1002_00291 at 314.255 kb on + strand, within MIT1002_00291 at 314.262 kb on - strand, within MIT1002_00291 at 314.263 kb on - strand, within MIT1002_00291 at 314.263 kb on - strand, within MIT1002_00291 at 314.275 kb on - strand, within MIT1002_00291 at 314.345 kb on + strand, within MIT1002_00291 at 314.449 kb on + strand, within MIT1002_00291 at 314.472 kb on + strand, within MIT1002_00291 at 314.472 kb on + strand, within MIT1002_00291 at 314.472 kb on + strand, within MIT1002_00291
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 312,149 - MIT1002_00287 0.32 -0.8 312,234 + MIT1002_00287 0.45 +2.7 312,242 - MIT1002_00287 0.46 -0.9 312,300 + MIT1002_00287 0.55 +1.2 312,300 + MIT1002_00287 0.55 -1.4 312,300 + MIT1002_00287 0.55 -0.7 312,300 + MIT1002_00287 0.55 +1.0 312,300 + MIT1002_00287 0.55 +1.1 312,300 + MIT1002_00287 0.55 -1.8 312,300 + MIT1002_00287 0.55 +0.0 312,300 + MIT1002_00287 0.55 +0.6 312,300 + MIT1002_00287 0.55 +3.2 312,300 + MIT1002_00287 0.55 -2.7 312,300 + MIT1002_00287 0.55 +0.9 312,300 + MIT1002_00287 0.55 +0.6 312,300 + MIT1002_00287 0.55 -0.9 312,300 + MIT1002_00287 0.55 -0.4 312,300 + MIT1002_00287 0.55 +1.7 312,300 + MIT1002_00287 0.55 +0.6 312,300 + MIT1002_00287 0.55 +1.3 312,300 + MIT1002_00287 0.55 -2.5 312,300 + MIT1002_00287 0.55 -1.3 312,300 + MIT1002_00287 0.55 -0.2 312,300 + MIT1002_00287 0.55 -0.3 312,300 + MIT1002_00287 0.55 +0.8 312,300 + MIT1002_00287 0.55 -2.4 312,300 + MIT1002_00287 0.55 -0.8 312,300 + MIT1002_00287 0.55 -0.1 312,300 + MIT1002_00287 0.55 +0.1 312,300 + MIT1002_00287 0.55 +0.4 312,300 + MIT1002_00287 0.55 -0.4 312,300 + MIT1002_00287 0.55 -0.6 312,300 + MIT1002_00287 0.55 +0.3 312,300 + MIT1002_00287 0.55 -0.4 312,300 + MIT1002_00287 0.55 -2.1 312,300 + MIT1002_00287 0.55 +0.1 312,300 + MIT1002_00287 0.55 +1.0 312,300 + MIT1002_00287 0.55 +0.3 312,300 + MIT1002_00287 0.55 -2.2 312,300 + MIT1002_00287 0.55 -2.5 312,308 - MIT1002_00287 0.56 -0.3 312,308 - MIT1002_00287 0.56 -2.7 312,308 - MIT1002_00287 0.56 +0.4 312,308 - MIT1002_00287 0.56 -0.2 312,308 - MIT1002_00287 0.56 -0.9 312,308 - MIT1002_00287 0.56 -0.3 312,308 - MIT1002_00287 0.56 +0.2 312,308 - MIT1002_00287 0.56 -0.0 312,308 - MIT1002_00287 0.56 -0.8 312,308 - MIT1002_00287 0.56 -1.2 312,308 - MIT1002_00287 0.56 -0.5 312,308 - MIT1002_00287 0.56 +0.1 312,308 - MIT1002_00287 0.56 +1.3 312,308 - MIT1002_00287 0.56 -0.2 312,308 - MIT1002_00287 0.56 +1.6 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 -0.0 312,308 - MIT1002_00287 0.56 -0.4 312,308 - MIT1002_00287 0.56 +0.2 312,308 - MIT1002_00287 0.56 -0.4 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 +2.5 312,308 - MIT1002_00287 0.56 -2.9 312,308 - MIT1002_00287 0.56 -0.8 312,308 - MIT1002_00287 0.56 +0.5 312,308 - MIT1002_00287 0.56 +0.2 312,308 - MIT1002_00287 0.56 -2.1 312,308 - MIT1002_00287 0.56 -0.2 312,308 - MIT1002_00287 0.56 +0.5 312,387 - MIT1002_00287 0.68 -0.1 312,415 + MIT1002_00287 0.73 -0.4 312,415 + MIT1002_00287 0.73 -0.5 312,423 + MIT1002_00287 0.74 -0.3 312,423 - MIT1002_00287 0.74 +0.9 312,423 - MIT1002_00287 0.74 +0.1 312,423 - MIT1002_00287 0.74 -1.4 312,423 - MIT1002_00287 0.74 +0.7 312,494 + MIT1002_00287 0.85 -0.6 312,621 - -0.1 312,651 - MIT1002_00288 0.10 +0.0 312,675 - MIT1002_00288 0.16 -0.6 312,712 - MIT1002_00288 0.24 +1.3 312,737 + MIT1002_00288 0.29 -0.7 312,840 - MIT1002_00288 0.52 -2.5 312,865 + MIT1002_00288 0.58 +0.2 312,910 - MIT1002_00288 0.68 +1.4 312,931 - MIT1002_00288 0.72 +0.6 312,931 - MIT1002_00288 0.72 -0.4 312,970 + MIT1002_00288 0.81 +0.4 313,135 - -0.6 313,208 - MIT1002_00289 0.28 +0.2 313,278 - MIT1002_00289 0.47 +0.2 313,284 + MIT1002_00289 0.48 +0.2 313,284 + MIT1002_00289 0.48 +0.4 313,292 - MIT1002_00289 0.50 -1.2 313,292 - MIT1002_00289 0.50 +0.3 313,327 + MIT1002_00289 0.60 -0.1 313,428 - MIT1002_00289 0.87 -1.3 313,429 - MIT1002_00289 0.88 -0.2 313,449 + +0.0 313,451 - -0.7 313,462 - -0.8 313,496 + -0.3 313,496 + -2.0 313,540 + +0.1 313,540 + +2.0 313,540 + +1.0 313,545 + -0.1 313,545 + -0.5 313,548 + -0.9 313,548 - +0.4 313,548 - -0.8 313,550 + +0.5 313,558 - -1.8 313,578 + MIT1002_00290 0.15 +1.5 313,578 + MIT1002_00290 0.15 -0.3 313,578 + MIT1002_00290 0.15 +0.6 313,612 - MIT1002_00290 0.34 +1.1 313,620 - MIT1002_00290 0.38 -0.1 313,651 - MIT1002_00290 0.55 -1.5 313,735 - +0.2 313,744 + -0.7 313,752 - +0.6 313,803 + +1.2 313,808 + -2.5 313,819 - -0.0 313,819 - -2.4 313,892 - -1.5 313,903 + -0.3 313,958 + +0.0 313,958 + +3.7 314,077 + -1.6 314,230 - MIT1002_00291 0.34 -2.5 314,255 + MIT1002_00291 0.39 -0.0 314,255 + MIT1002_00291 0.39 -3.0 314,255 + MIT1002_00291 0.39 -1.4 314,262 - MIT1002_00291 0.41 +0.0 314,263 - MIT1002_00291 0.41 -1.0 314,263 - MIT1002_00291 0.41 +0.5 314,275 - MIT1002_00291 0.44 +2.4 314,345 + MIT1002_00291 0.59 +2.2 314,449 + MIT1002_00291 0.81 -0.9 314,472 + MIT1002_00291 0.86 +0.5 314,472 + MIT1002_00291 0.86 +0.7 314,472 + MIT1002_00291 0.86 -0.5
Or see this region's nucleotide sequence