Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00275

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00274 and MIT1002_00275 are separated by 17 nucleotidesMIT1002_00275 and MIT1002_00276 are separated by 18 nucleotidesMIT1002_00276 and MIT1002_00277 overlap by 1 nucleotidesMIT1002_00277 and MIT1002_00278 overlap by 8 nucleotidesMIT1002_00278 and MIT1002_00279 overlap by 11 nucleotides MIT1002_00274: MIT1002_00274 - Uptake hydrogenase small subunit precursor, at 299,345 to 300,343 _00274 MIT1002_00275: MIT1002_00275 - Hydrogenase-1 large chain, at 300,361 to 302,238 _00275 MIT1002_00276: MIT1002_00276 - hypothetical protein, at 302,257 to 302,472 _00276 MIT1002_00277: MIT1002_00277 - Hydrogenase isoenzymes formation protein HypC, at 302,472 to 302,699 _00277 MIT1002_00278: MIT1002_00278 - hydrogenase nickel incorporation protein, at 302,692 to 303,078 _00278 MIT1002_00279: MIT1002_00279 - Hydrogenase isoenzymes nickel incorporation protein HypB, at 303,068 to 303,814 _00279 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 299.482 kb on - strand, within MIT1002_00274at 299.521 kb on + strand, within MIT1002_00274at 299.531 kb on + strand, within MIT1002_00274at 299.531 kb on + strand, within MIT1002_00274at 299.531 kb on + strand, within MIT1002_00274at 299.534 kb on - strand, within MIT1002_00274at 299.554 kb on - strand, within MIT1002_00274at 299.564 kb on - strand, within MIT1002_00274at 299.658 kb on - strand, within MIT1002_00274at 299.658 kb on - strand, within MIT1002_00274at 299.724 kb on + strand, within MIT1002_00274at 299.724 kb on + strand, within MIT1002_00274at 299.727 kb on - strand, within MIT1002_00274at 299.741 kb on - strand, within MIT1002_00274at 299.809 kb on + strand, within MIT1002_00274at 299.844 kb on - strand, within MIT1002_00274at 299.917 kb on - strand, within MIT1002_00274at 299.927 kb on - strand, within MIT1002_00274at 300.034 kb on + strand, within MIT1002_00274at 300.065 kb on - strand, within MIT1002_00274at 300.198 kb on - strand, within MIT1002_00274at 300.269 kb on + strandat 300.269 kb on + strandat 300.284 kb on - strandat 300.295 kb on + strandat 300.312 kb on - strandat 300.436 kb on + strandat 300.453 kb on - strandat 300.481 kb on - strandat 300.515 kb on + strandat 300.523 kb on - strandat 300.523 kb on - strandat 300.523 kb on - strandat 300.573 kb on + strand, within MIT1002_00275at 300.573 kb on + strand, within MIT1002_00275at 300.581 kb on + strand, within MIT1002_00275at 300.609 kb on - strand, within MIT1002_00275at 300.622 kb on + strand, within MIT1002_00275at 300.664 kb on + strand, within MIT1002_00275at 300.765 kb on - strand, within MIT1002_00275at 300.776 kb on + strand, within MIT1002_00275at 300.784 kb on - strand, within MIT1002_00275at 300.817 kb on + strand, within MIT1002_00275at 300.862 kb on - strand, within MIT1002_00275at 300.897 kb on + strand, within MIT1002_00275at 300.905 kb on + strand, within MIT1002_00275at 300.990 kb on + strand, within MIT1002_00275at 300.995 kb on + strand, within MIT1002_00275at 300.995 kb on + strand, within MIT1002_00275at 301.040 kb on - strand, within MIT1002_00275at 301.088 kb on + strand, within MIT1002_00275at 301.096 kb on - strand, within MIT1002_00275at 301.109 kb on - strand, within MIT1002_00275at 301.168 kb on + strand, within MIT1002_00275at 301.216 kb on + strand, within MIT1002_00275at 301.232 kb on - strand, within MIT1002_00275at 301.292 kb on - strand, within MIT1002_00275at 301.324 kb on + strand, within MIT1002_00275at 301.340 kb on + strand, within MIT1002_00275at 301.340 kb on + strand, within MIT1002_00275at 301.340 kb on + strand, within MIT1002_00275at 301.345 kb on + strand, within MIT1002_00275at 301.348 kb on - strand, within MIT1002_00275at 301.348 kb on - strand, within MIT1002_00275at 301.348 kb on - strand, within MIT1002_00275at 301.424 kb on + strand, within MIT1002_00275at 301.424 kb on + strand, within MIT1002_00275at 301.424 kb on + strand, within MIT1002_00275at 301.424 kb on + strand, within MIT1002_00275at 301.432 kb on - strand, within MIT1002_00275at 301.432 kb on - strand, within MIT1002_00275at 301.432 kb on - strand, within MIT1002_00275at 301.432 kb on - strand, within MIT1002_00275at 301.435 kb on + strand, within MIT1002_00275at 301.436 kb on + strand, within MIT1002_00275at 301.455 kb on + strand, within MIT1002_00275at 301.460 kb on + strand, within MIT1002_00275at 301.468 kb on - strand, within MIT1002_00275at 301.468 kb on - strand, within MIT1002_00275at 301.518 kb on + strand, within MIT1002_00275at 301.541 kb on + strand, within MIT1002_00275at 301.558 kb on - strand, within MIT1002_00275at 301.591 kb on - strand, within MIT1002_00275at 301.605 kb on + strand, within MIT1002_00275at 301.618 kb on + strand, within MIT1002_00275at 301.728 kb on - strand, within MIT1002_00275at 301.728 kb on - strand, within MIT1002_00275at 301.728 kb on - strand, within MIT1002_00275at 301.728 kb on - strand, within MIT1002_00275at 301.800 kb on + strand, within MIT1002_00275at 301.842 kb on + strand, within MIT1002_00275at 301.850 kb on - strand, within MIT1002_00275at 301.850 kb on - strand, within MIT1002_00275at 301.893 kb on + strand, within MIT1002_00275at 301.893 kb on + strand, within MIT1002_00275at 301.901 kb on - strand, within MIT1002_00275at 301.901 kb on - strand, within MIT1002_00275at 301.907 kb on + strand, within MIT1002_00275at 301.943 kb on + strand, within MIT1002_00275at 301.951 kb on - strand, within MIT1002_00275at 302.103 kb on - strandat 302.159 kb on + strandat 302.166 kb on + strandat 302.171 kb on + strandat 302.182 kb on + strandat 302.513 kb on + strand, within MIT1002_00277at 302.539 kb on - strand, within MIT1002_00277at 302.575 kb on + strand, within MIT1002_00277at 302.583 kb on - strand, within MIT1002_00277at 302.659 kb on + strand, within MIT1002_00277at 302.667 kb on - strand, within MIT1002_00277at 302.678 kb on + strandat 302.678 kb on + strandat 302.686 kb on - strandat 302.737 kb on + strand, within MIT1002_00278at 302.743 kb on - strand, within MIT1002_00278at 302.779 kb on - strand, within MIT1002_00278at 302.846 kb on - strand, within MIT1002_00278at 302.882 kb on - strand, within MIT1002_00278at 302.996 kb on - strand, within MIT1002_00278at 303.027 kb on + strand, within MIT1002_00278at 303.050 kb on + strandat 303.058 kb on - strandat 303.135 kb on + strandat 303.180 kb on - strand, within MIT1002_00279at 303.213 kb on + strand, within MIT1002_00279

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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299,482 - MIT1002_00274 0.14 +0.0
299,521 + MIT1002_00274 0.18 -0.7
299,531 + MIT1002_00274 0.19 +0.8
299,531 + MIT1002_00274 0.19 +1.1
299,531 + MIT1002_00274 0.19 -0.5
299,534 - MIT1002_00274 0.19 +0.0
299,554 - MIT1002_00274 0.21 -1.5
299,564 - MIT1002_00274 0.22 +0.4
299,658 - MIT1002_00274 0.31 -1.6
299,658 - MIT1002_00274 0.31 -0.3
299,724 + MIT1002_00274 0.38 -0.7
299,724 + MIT1002_00274 0.38 -1.4
299,727 - MIT1002_00274 0.38 +0.2
299,741 - MIT1002_00274 0.40 +1.5
299,809 + MIT1002_00274 0.46 -1.1
299,844 - MIT1002_00274 0.50 +0.0
299,917 - MIT1002_00274 0.57 -1.2
299,927 - MIT1002_00274 0.58 -3.0
300,034 + MIT1002_00274 0.69 -2.0
300,065 - MIT1002_00274 0.72 +0.3
300,198 - MIT1002_00274 0.85 +0.6
300,269 + -0.6
300,269 + -0.7
300,284 - +0.6
300,295 + -0.2
300,312 - -0.2
300,436 + +0.1
300,453 - +2.9
300,481 - +0.1
300,515 + -0.7
300,523 - +1.4
300,523 - +0.8
300,523 - +0.2
300,573 + MIT1002_00275 0.11 +2.0
300,573 + MIT1002_00275 0.11 -1.0
300,581 + MIT1002_00275 0.12 -0.4
300,609 - MIT1002_00275 0.13 -0.4
300,622 + MIT1002_00275 0.14 +1.4
300,664 + MIT1002_00275 0.16 +2.0
300,765 - MIT1002_00275 0.22 +0.8
300,776 + MIT1002_00275 0.22 +0.9
300,784 - MIT1002_00275 0.23 +0.5
300,817 + MIT1002_00275 0.24 -0.2
300,862 - MIT1002_00275 0.27 -2.7
300,897 + MIT1002_00275 0.29 -1.1
300,905 + MIT1002_00275 0.29 +0.5
300,990 + MIT1002_00275 0.33 -1.6
300,995 + MIT1002_00275 0.34 -0.6
300,995 + MIT1002_00275 0.34 -0.6
301,040 - MIT1002_00275 0.36 +1.8
301,088 + MIT1002_00275 0.39 +1.8
301,096 - MIT1002_00275 0.39 +2.8
301,109 - MIT1002_00275 0.40 -1.2
301,168 + MIT1002_00275 0.43 +0.9
301,216 + MIT1002_00275 0.46 -1.8
301,232 - MIT1002_00275 0.46 -0.6
301,292 - MIT1002_00275 0.50 -2.0
301,324 + MIT1002_00275 0.51 -1.0
301,340 + MIT1002_00275 0.52 +1.9
301,340 + MIT1002_00275 0.52 +0.8
301,340 + MIT1002_00275 0.52 -0.3
301,345 + MIT1002_00275 0.52 +0.9
301,348 - MIT1002_00275 0.53 -2.8
301,348 - MIT1002_00275 0.53 -2.0
301,348 - MIT1002_00275 0.53 -2.1
301,424 + MIT1002_00275 0.57 -2.4
301,424 + MIT1002_00275 0.57 +0.8
301,424 + MIT1002_00275 0.57 -0.2
301,424 + MIT1002_00275 0.57 +0.9
301,432 - MIT1002_00275 0.57 +0.5
301,432 - MIT1002_00275 0.57 +0.5
301,432 - MIT1002_00275 0.57 -1.0
301,432 - MIT1002_00275 0.57 +0.2
301,435 + MIT1002_00275 0.57 +1.0
301,436 + MIT1002_00275 0.57 +1.1
301,455 + MIT1002_00275 0.58 +0.6
301,460 + MIT1002_00275 0.59 +1.2
301,468 - MIT1002_00275 0.59 -1.5
301,468 - MIT1002_00275 0.59 -0.1
301,518 + MIT1002_00275 0.62 +0.6
301,541 + MIT1002_00275 0.63 -0.3
301,558 - MIT1002_00275 0.64 +0.9
301,591 - MIT1002_00275 0.65 -0.9
301,605 + MIT1002_00275 0.66 -0.5
301,618 + MIT1002_00275 0.67 -1.3
301,728 - MIT1002_00275 0.73 -0.1
301,728 - MIT1002_00275 0.73 +0.3
301,728 - MIT1002_00275 0.73 +0.8
301,728 - MIT1002_00275 0.73 +1.3
301,800 + MIT1002_00275 0.77 -0.3
301,842 + MIT1002_00275 0.79 +0.6
301,850 - MIT1002_00275 0.79 -1.2
301,850 - MIT1002_00275 0.79 +2.2
301,893 + MIT1002_00275 0.82 +0.1
301,893 + MIT1002_00275 0.82 +2.3
301,901 - MIT1002_00275 0.82 -0.5
301,901 - MIT1002_00275 0.82 -0.4
301,907 + MIT1002_00275 0.82 +0.4
301,943 + MIT1002_00275 0.84 +2.2
301,951 - MIT1002_00275 0.85 +0.7
302,103 - -0.7
302,159 + +1.8
302,166 + +0.7
302,171 + -0.3
302,182 + +0.8
302,513 + MIT1002_00277 0.18 -1.0
302,539 - MIT1002_00277 0.29 +0.2
302,575 + MIT1002_00277 0.45 -0.9
302,583 - MIT1002_00277 0.49 +0.4
302,659 + MIT1002_00277 0.82 +0.0
302,667 - MIT1002_00277 0.86 -0.2
302,678 + +0.4
302,678 + -0.9
302,686 - -0.2
302,737 + MIT1002_00278 0.12 +1.4
302,743 - MIT1002_00278 0.13 -0.6
302,779 - MIT1002_00278 0.22 -0.5
302,846 - MIT1002_00278 0.40 -2.2
302,882 - MIT1002_00278 0.49 -0.5
302,996 - MIT1002_00278 0.79 -2.2
303,027 + MIT1002_00278 0.87 -1.1
303,050 + -2.4
303,058 - -0.7
303,135 + +0.6
303,180 - MIT1002_00279 0.15 -0.3
303,213 + MIT1002_00279 0.19 +0.6

Or see this region's nucleotide sequence