Experiment: monoculture; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00259 and MIT1002_00260 are separated by 85 nucleotides MIT1002_00260 and MIT1002_00261 are separated by 99 nucleotides
MIT1002_00259: MIT1002_00259 - hypothetical protein, at 287,248 to 288,231
_00259
MIT1002_00260: MIT1002_00260 - hypothetical protein, at 288,317 to 288,442
_00260
MIT1002_00261: MIT1002_00261 - putative FAD-linked oxidoreductase YvdP, at 288,542 to 290,656
_00261
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1 at 287.436 kb on + strand, within MIT1002_00259 at 287.661 kb on - strand, within MIT1002_00259 at 287.687 kb on + strand, within MIT1002_00259 at 287.688 kb on + strand, within MIT1002_00259 at 287.761 kb on + strand, within MIT1002_00259 at 287.813 kb on - strand, within MIT1002_00259 at 287.813 kb on - strand, within MIT1002_00259 at 287.867 kb on - strand, within MIT1002_00259 at 287.953 kb on - strand, within MIT1002_00259 at 287.953 kb on - strand, within MIT1002_00259 at 287.970 kb on + strand, within MIT1002_00259 at 287.978 kb on - strand, within MIT1002_00259 at 288.067 kb on + strand, within MIT1002_00259 at 288.241 kb on + strand at 288.248 kb on - strand at 288.250 kb on + strand at 288.257 kb on - strand at 288.258 kb on - strand at 288.258 kb on - strand at 288.259 kb on + strand at 288.260 kb on + strand at 288.266 kb on + strand at 288.266 kb on + strand at 288.292 kb on - strand at 288.295 kb on + strand at 288.358 kb on - strand, within MIT1002_00260 at 288.553 kb on + strand at 288.564 kb on - strand at 288.564 kb on - strand at 288.572 kb on - strand at 288.651 kb on - strand at 288.744 kb on - strand at 288.764 kb on - strand, within MIT1002_00261 at 288.800 kb on - strand, within MIT1002_00261 at 288.909 kb on + strand, within MIT1002_00261 at 288.973 kb on - strand, within MIT1002_00261 at 288.985 kb on + strand, within MIT1002_00261 at 289.036 kb on + strand, within MIT1002_00261 at 289.071 kb on + strand, within MIT1002_00261 at 289.140 kb on - strand, within MIT1002_00261 at 289.195 kb on - strand, within MIT1002_00261 at 289.336 kb on + strand, within MIT1002_00261
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6 remove 287,436 + MIT1002_00259 0.19 +1.0 287,661 - MIT1002_00259 0.42 +0.1 287,687 + MIT1002_00259 0.45 +0.5 287,688 + MIT1002_00259 0.45 -1.5 287,761 + MIT1002_00259 0.52 +0.2 287,813 - MIT1002_00259 0.57 -0.1 287,813 - MIT1002_00259 0.57 -1.3 287,867 - MIT1002_00259 0.63 -0.9 287,953 - MIT1002_00259 0.72 -0.1 287,953 - MIT1002_00259 0.72 +0.9 287,970 + MIT1002_00259 0.73 -1.3 287,978 - MIT1002_00259 0.74 -2.1 288,067 + MIT1002_00259 0.83 -1.6 288,241 + +1.1 288,248 - -1.6 288,250 + +0.1 288,257 - +0.3 288,258 - +1.1 288,258 - -1.2 288,259 + -0.2 288,260 + -0.5 288,266 + -1.5 288,266 + -1.0 288,292 - +0.9 288,295 + -0.9 288,358 - MIT1002_00260 0.33 +0.8 288,553 + -0.4 288,564 - -1.2 288,564 - -2.6 288,572 - +0.1 288,651 - +0.4 288,744 - +0.0 288,764 - MIT1002_00261 0.10 -0.9 288,800 - MIT1002_00261 0.12 -0.2 288,909 + MIT1002_00261 0.17 +0.4 288,973 - MIT1002_00261 0.20 -1.6 288,985 + MIT1002_00261 0.21 +0.5 289,036 + MIT1002_00261 0.23 -0.1 289,071 + MIT1002_00261 0.25 -0.5 289,140 - MIT1002_00261 0.28 -1.5 289,195 - MIT1002_00261 0.31 -1.1 289,336 + MIT1002_00261 0.38 +0.4
Or see this region's nucleotide sequence