Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00204

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00203 and MIT1002_00204 overlap by 4 nucleotidesMIT1002_00204 and MIT1002_00205 overlap by 26 nucleotidesMIT1002_00205 and MIT1002_00206 are separated by 9 nucleotidesMIT1002_00206 and MIT1002_00207 overlap by 17 nucleotides MIT1002_00203: MIT1002_00203 - hypothetical protein, at 226,564 to 227,478 _00203 MIT1002_00204: MIT1002_00204 - Fimbrial assembly protein (PilN), at 227,475 to 228,101 _00204 MIT1002_00205: MIT1002_00205 - General secretion pathway, M protein, at 228,076 to 228,723 _00205 MIT1002_00206: MIT1002_00206 - hypothetical protein, at 228,733 to 229,053 _00206 MIT1002_00207: MIT1002_00207 - Pectic enzymes secretion protein OutD, at 229,037 to 230,785 _00207 Position (kb) 227 228 229Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 226.559 kb on - strandat 226.618 kb on + strandat 226.638 kb on + strandat 226.659 kb on + strand, within MIT1002_00203at 226.744 kb on + strand, within MIT1002_00203at 226.798 kb on + strand, within MIT1002_00203at 226.803 kb on + strand, within MIT1002_00203at 226.816 kb on - strand, within MIT1002_00203at 226.821 kb on - strand, within MIT1002_00203at 226.845 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on - strand, within MIT1002_00203at 226.871 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.898 kb on - strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.917 kb on - strand, within MIT1002_00203at 226.941 kb on - strand, within MIT1002_00203at 226.941 kb on - strand, within MIT1002_00203at 226.966 kb on - strand, within MIT1002_00203at 226.983 kb on - strand, within MIT1002_00203at 227.007 kb on + strand, within MIT1002_00203at 227.061 kb on - strand, within MIT1002_00203at 227.083 kb on + strand, within MIT1002_00203at 227.116 kb on + strand, within MIT1002_00203at 227.126 kb on - strand, within MIT1002_00203at 227.232 kb on - strand, within MIT1002_00203at 227.269 kb on - strand, within MIT1002_00203at 227.415 kb on + strandat 227.493 kb on - strandat 227.506 kb on + strandat 227.600 kb on + strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.622 kb on - strand, within MIT1002_00204at 227.622 kb on - strand, within MIT1002_00204at 227.781 kb on + strand, within MIT1002_00204at 227.799 kb on - strand, within MIT1002_00204at 227.865 kb on - strand, within MIT1002_00204at 227.907 kb on - strand, within MIT1002_00204at 227.913 kb on + strand, within MIT1002_00204at 227.913 kb on + strand, within MIT1002_00204at 227.941 kb on - strand, within MIT1002_00204at 227.941 kb on - strand, within MIT1002_00204at 228.003 kb on - strand, within MIT1002_00204at 228.115 kb on + strandat 228.115 kb on + strandat 228.123 kb on - strandat 228.123 kb on - strandat 228.160 kb on - strand, within MIT1002_00205at 228.160 kb on - strand, within MIT1002_00205at 228.324 kb on + strand, within MIT1002_00205at 228.331 kb on - strand, within MIT1002_00205at 228.339 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.431 kb on - strand, within MIT1002_00205at 228.521 kb on - strand, within MIT1002_00205at 228.569 kb on + strand, within MIT1002_00205at 228.587 kb on + strand, within MIT1002_00205at 228.597 kb on + strand, within MIT1002_00205at 228.605 kb on - strand, within MIT1002_00205at 228.605 kb on - strand, within MIT1002_00205at 228.631 kb on + strand, within MIT1002_00205at 228.673 kb on + strandat 228.673 kb on + strandat 228.673 kb on + strandat 228.673 kb on + strandat 228.681 kb on - strandat 228.688 kb on - strandat 228.720 kb on + strandat 228.741 kb on - strandat 228.845 kb on - strand, within MIT1002_00206at 228.901 kb on + strand, within MIT1002_00206at 228.904 kb on - strand, within MIT1002_00206at 228.955 kb on + strand, within MIT1002_00206at 229.072 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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226,559 - -0.2
226,618 + -0.2
226,638 + +0.0
226,659 + MIT1002_00203 0.10 +0.9
226,744 + MIT1002_00203 0.20 +0.6
226,798 + MIT1002_00203 0.26 -0.3
226,803 + MIT1002_00203 0.26 +0.5
226,816 - MIT1002_00203 0.28 +0.1
226,821 - MIT1002_00203 0.28 -0.4
226,845 + MIT1002_00203 0.31 +0.1
226,871 + MIT1002_00203 0.34 +2.9
226,871 + MIT1002_00203 0.34 +0.3
226,871 + MIT1002_00203 0.34 +0.8
226,871 - MIT1002_00203 0.34 +0.4
226,871 - MIT1002_00203 0.34 +0.6
226,879 - MIT1002_00203 0.34 +0.4
226,879 - MIT1002_00203 0.34 +0.4
226,879 - MIT1002_00203 0.34 +0.8
226,879 - MIT1002_00203 0.34 +0.4
226,898 - MIT1002_00203 0.37 +0.1
226,909 + MIT1002_00203 0.38 +0.9
226,909 + MIT1002_00203 0.38 +1.8
226,909 + MIT1002_00203 0.38 +1.7
226,909 + MIT1002_00203 0.38 -0.2
226,909 + MIT1002_00203 0.38 -1.5
226,909 + MIT1002_00203 0.38 -0.5
226,909 + MIT1002_00203 0.38 +1.6
226,917 - MIT1002_00203 0.39 +1.0
226,941 - MIT1002_00203 0.41 +2.4
226,941 - MIT1002_00203 0.41 +0.2
226,966 - MIT1002_00203 0.44 +0.4
226,983 - MIT1002_00203 0.46 +0.0
227,007 + MIT1002_00203 0.48 +2.8
227,061 - MIT1002_00203 0.54 +0.4
227,083 + MIT1002_00203 0.57 +1.3
227,116 + MIT1002_00203 0.60 -0.9
227,126 - MIT1002_00203 0.61 +2.0
227,232 - MIT1002_00203 0.73 -1.2
227,269 - MIT1002_00203 0.77 +0.8
227,415 + +1.4
227,493 - -0.3
227,506 + +1.2
227,600 + MIT1002_00204 0.20 +0.5
227,610 - MIT1002_00204 0.22 -0.5
227,610 - MIT1002_00204 0.22 -0.2
227,610 - MIT1002_00204 0.22 +1.3
227,610 - MIT1002_00204 0.22 -0.6
227,622 - MIT1002_00204 0.23 +1.2
227,622 - MIT1002_00204 0.23 +0.2
227,781 + MIT1002_00204 0.49 +0.0
227,799 - MIT1002_00204 0.52 -1.3
227,865 - MIT1002_00204 0.62 +0.1
227,907 - MIT1002_00204 0.69 -0.2
227,913 + MIT1002_00204 0.70 +0.4
227,913 + MIT1002_00204 0.70 +6.9
227,941 - MIT1002_00204 0.74 +2.2
227,941 - MIT1002_00204 0.74 -0.1
228,003 - MIT1002_00204 0.84 -0.1
228,115 + +0.7
228,115 + +2.1
228,123 - +2.6
228,123 - +1.8
228,160 - MIT1002_00205 0.13 +1.7
228,160 - MIT1002_00205 0.13 +1.1
228,324 + MIT1002_00205 0.38 -0.4
228,331 - MIT1002_00205 0.39 +1.4
228,339 + MIT1002_00205 0.41 -0.1
228,393 + MIT1002_00205 0.49 -1.0
228,393 + MIT1002_00205 0.49 +1.3
228,423 + MIT1002_00205 0.54 +0.1
228,423 + MIT1002_00205 0.54 -0.1
228,431 - MIT1002_00205 0.55 -0.1
228,521 - MIT1002_00205 0.69 -1.1
228,569 + MIT1002_00205 0.76 +1.6
228,587 + MIT1002_00205 0.79 +1.0
228,597 + MIT1002_00205 0.80 +1.6
228,605 - MIT1002_00205 0.82 +2.5
228,605 - MIT1002_00205 0.82 -0.8
228,631 + MIT1002_00205 0.86 -0.3
228,673 + +0.4
228,673 + -0.3
228,673 + +1.6
228,673 + +0.5
228,681 - +0.9
228,688 - +2.4
228,720 + -0.8
228,741 - -0.7
228,845 - MIT1002_00206 0.35 -1.5
228,901 + MIT1002_00206 0.52 +0.3
228,904 - MIT1002_00206 0.53 +2.2
228,955 + MIT1002_00206 0.69 +0.8
229,072 + -0.5

Or see this region's nucleotide sequence