Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00134

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00133 and MIT1002_00134 are separated by 316 nucleotidesMIT1002_00134 and MIT1002_00135 are separated by 21 nucleotides MIT1002_00133: MIT1002_00133 - Small T antigen, at 142,293 to 143,012 _00133 MIT1002_00134: MIT1002_00134 - Acriflavine resistance protein A precursor, at 143,329 to 144,474 _00134 MIT1002_00135: MIT1002_00135 - Multidrug-efflux transporter MexB, at 144,496 to 147,594 _00135 Position (kb) 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 142.337 kb on - strandat 142.404 kb on - strand, within MIT1002_00133at 142.404 kb on - strand, within MIT1002_00133at 142.475 kb on + strand, within MIT1002_00133at 142.528 kb on + strand, within MIT1002_00133at 142.538 kb on + strand, within MIT1002_00133at 142.546 kb on - strand, within MIT1002_00133at 142.546 kb on - strand, within MIT1002_00133at 142.684 kb on - strand, within MIT1002_00133at 142.684 kb on - strand, within MIT1002_00133at 142.702 kb on + strand, within MIT1002_00133at 142.703 kb on - strand, within MIT1002_00133at 142.740 kb on - strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.813 kb on + strand, within MIT1002_00133at 142.821 kb on - strand, within MIT1002_00133at 142.821 kb on - strand, within MIT1002_00133at 142.821 kb on - strand, within MIT1002_00133at 142.821 kb on - strand, within MIT1002_00133at 142.821 kb on - strand, within MIT1002_00133at 142.837 kb on + strand, within MIT1002_00133at 142.848 kb on + strand, within MIT1002_00133at 142.856 kb on - strand, within MIT1002_00133at 142.859 kb on + strand, within MIT1002_00133at 142.937 kb on + strand, within MIT1002_00133at 142.990 kb on - strandat 143.024 kb on - strandat 143.131 kb on + strandat 143.138 kb on + strandat 143.148 kb on + strandat 143.156 kb on - strandat 143.156 kb on - strandat 143.169 kb on + strandat 143.184 kb on + strandat 143.204 kb on + strandat 143.234 kb on - strandat 143.296 kb on - strandat 143.296 kb on - strandat 143.360 kb on + strandat 143.387 kb on + strandat 143.417 kb on + strandat 143.417 kb on + strandat 143.420 kb on - strandat 143.435 kb on - strandat 143.435 kb on - strandat 143.491 kb on + strand, within MIT1002_00134at 143.504 kb on + strand, within MIT1002_00134at 143.504 kb on + strand, within MIT1002_00134at 143.504 kb on + strand, within MIT1002_00134at 143.579 kb on + strand, within MIT1002_00134at 143.617 kb on + strand, within MIT1002_00134at 143.638 kb on + strand, within MIT1002_00134at 143.638 kb on + strand, within MIT1002_00134at 143.640 kb on + strand, within MIT1002_00134at 143.646 kb on - strand, within MIT1002_00134at 143.646 kb on - strand, within MIT1002_00134at 143.646 kb on - strand, within MIT1002_00134at 143.646 kb on - strand, within MIT1002_00134at 143.648 kb on - strand, within MIT1002_00134at 143.682 kb on + strand, within MIT1002_00134at 143.691 kb on - strand, within MIT1002_00134at 143.711 kb on - strand, within MIT1002_00134at 143.813 kb on - strand, within MIT1002_00134at 143.855 kb on - strand, within MIT1002_00134at 143.876 kb on + strand, within MIT1002_00134at 143.942 kb on + strand, within MIT1002_00134at 143.950 kb on - strand, within MIT1002_00134at 143.950 kb on - strand, within MIT1002_00134at 143.950 kb on - strand, within MIT1002_00134at 143.961 kb on + strand, within MIT1002_00134at 143.981 kb on + strand, within MIT1002_00134at 144.010 kb on - strand, within MIT1002_00134at 144.113 kb on + strand, within MIT1002_00134at 144.116 kb on - strand, within MIT1002_00134at 144.121 kb on - strand, within MIT1002_00134at 144.134 kb on + strand, within MIT1002_00134at 144.207 kb on - strand, within MIT1002_00134at 144.286 kb on + strand, within MIT1002_00134at 144.358 kb on + strand, within MIT1002_00134at 144.358 kb on + strand, within MIT1002_00134at 144.411 kb on + strandat 144.459 kb on - strandat 144.521 kb on - strandat 144.527 kb on + strandat 144.607 kb on - strandat 144.770 kb on + strandat 144.770 kb on + strandat 144.770 kb on + strandat 144.770 kb on + strandat 144.778 kb on - strandat 144.778 kb on - strandat 144.789 kb on + strandat 144.823 kb on + strand, within MIT1002_00135at 144.823 kb on + strand, within MIT1002_00135at 144.831 kb on - strand, within MIT1002_00135at 144.851 kb on + strand, within MIT1002_00135at 144.871 kb on - strand, within MIT1002_00135at 144.944 kb on + strand, within MIT1002_00135at 144.987 kb on + strand, within MIT1002_00135at 144.995 kb on + strand, within MIT1002_00135at 144.995 kb on - strand, within MIT1002_00135at 145.028 kb on - strand, within MIT1002_00135at 145.074 kb on - strand, within MIT1002_00135at 145.082 kb on + strand, within MIT1002_00135at 145.090 kb on - strand, within MIT1002_00135at 145.132 kb on - strand, within MIT1002_00135at 145.203 kb on + strand, within MIT1002_00135at 145.253 kb on + strand, within MIT1002_00135at 145.270 kb on - strand, within MIT1002_00135at 145.292 kb on + strand, within MIT1002_00135at 145.298 kb on + strand, within MIT1002_00135at 145.300 kb on - strand, within MIT1002_00135at 145.370 kb on - strand, within MIT1002_00135at 145.461 kb on + strand, within MIT1002_00135at 145.461 kb on + strand, within MIT1002_00135at 145.469 kb on - strand, within MIT1002_00135at 145.469 kb on - strand, within MIT1002_00135

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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142,337 - -1.9
142,404 - MIT1002_00133 0.15 -0.2
142,404 - MIT1002_00133 0.15 +0.0
142,475 + MIT1002_00133 0.25 -0.8
142,528 + MIT1002_00133 0.33 +0.6
142,538 + MIT1002_00133 0.34 +0.7
142,546 - MIT1002_00133 0.35 +1.1
142,546 - MIT1002_00133 0.35 -2.3
142,684 - MIT1002_00133 0.54 +1.7
142,684 - MIT1002_00133 0.54 -1.0
142,702 + MIT1002_00133 0.57 +0.9
142,703 - MIT1002_00133 0.57 +0.9
142,740 - MIT1002_00133 0.62 -0.9
142,813 + MIT1002_00133 0.72 +0.0
142,813 + MIT1002_00133 0.72 -0.2
142,813 + MIT1002_00133 0.72 +0.1
142,813 + MIT1002_00133 0.72 +0.9
142,813 + MIT1002_00133 0.72 -1.0
142,813 + MIT1002_00133 0.72 +0.8
142,813 + MIT1002_00133 0.72 -1.1
142,813 + MIT1002_00133 0.72 -0.5
142,821 - MIT1002_00133 0.73 +0.6
142,821 - MIT1002_00133 0.73 -1.3
142,821 - MIT1002_00133 0.73 -0.7
142,821 - MIT1002_00133 0.73 +1.9
142,821 - MIT1002_00133 0.73 -0.1
142,837 + MIT1002_00133 0.76 +0.1
142,848 + MIT1002_00133 0.77 +1.2
142,856 - MIT1002_00133 0.78 +0.8
142,859 + MIT1002_00133 0.79 -0.0
142,937 + MIT1002_00133 0.89 -1.2
142,990 - +0.2
143,024 - -0.6
143,131 + -1.4
143,138 + -0.6
143,148 + +0.3
143,156 - -0.4
143,156 - -0.9
143,169 + +0.3
143,184 + +0.3
143,204 + -1.6
143,234 - +0.5
143,296 - -2.0
143,296 - -3.1
143,360 + -0.1
143,387 + +0.7
143,417 + +0.5
143,417 + -0.3
143,420 - -0.1
143,435 - -0.7
143,435 - +1.0
143,491 + MIT1002_00134 0.14 +0.3
143,504 + MIT1002_00134 0.15 -0.7
143,504 + MIT1002_00134 0.15 -0.6
143,504 + MIT1002_00134 0.15 -0.1
143,579 + MIT1002_00134 0.22 +0.7
143,617 + MIT1002_00134 0.25 -0.2
143,638 + MIT1002_00134 0.27 -0.2
143,638 + MIT1002_00134 0.27 -1.1
143,640 + MIT1002_00134 0.27 +0.0
143,646 - MIT1002_00134 0.28 -1.1
143,646 - MIT1002_00134 0.28 -2.6
143,646 - MIT1002_00134 0.28 +1.7
143,646 - MIT1002_00134 0.28 +2.1
143,648 - MIT1002_00134 0.28 +3.1
143,682 + MIT1002_00134 0.31 -1.4
143,691 - MIT1002_00134 0.32 +1.5
143,711 - MIT1002_00134 0.33 -2.1
143,813 - MIT1002_00134 0.42 +0.3
143,855 - MIT1002_00134 0.46 -1.8
143,876 + MIT1002_00134 0.48 +0.1
143,942 + MIT1002_00134 0.53 +2.8
143,950 - MIT1002_00134 0.54 -0.1
143,950 - MIT1002_00134 0.54 +1.5
143,950 - MIT1002_00134 0.54 -0.3
143,961 + MIT1002_00134 0.55 -0.9
143,981 + MIT1002_00134 0.57 -0.8
144,010 - MIT1002_00134 0.59 -0.7
144,113 + MIT1002_00134 0.68 -1.1
144,116 - MIT1002_00134 0.69 +0.3
144,121 - MIT1002_00134 0.69 +2.0
144,134 + MIT1002_00134 0.70 +2.6
144,207 - MIT1002_00134 0.77 +1.6
144,286 + MIT1002_00134 0.84 +1.3
144,358 + MIT1002_00134 0.90 -0.7
144,358 + MIT1002_00134 0.90 -0.0
144,411 + +0.8
144,459 - +0.3
144,521 - -1.5
144,527 + -0.3
144,607 - -0.3
144,770 + -0.7
144,770 + -0.1
144,770 + -2.0
144,770 + -0.7
144,778 - +0.6
144,778 - -0.3
144,789 + +1.8
144,823 + MIT1002_00135 0.11 +1.3
144,823 + MIT1002_00135 0.11 -0.5
144,831 - MIT1002_00135 0.11 +0.2
144,851 + MIT1002_00135 0.11 +0.9
144,871 - MIT1002_00135 0.12 +0.1
144,944 + MIT1002_00135 0.14 -2.4
144,987 + MIT1002_00135 0.16 -0.3
144,995 + MIT1002_00135 0.16 -1.7
144,995 - MIT1002_00135 0.16 -0.9
145,028 - MIT1002_00135 0.17 +0.7
145,074 - MIT1002_00135 0.19 -0.0
145,082 + MIT1002_00135 0.19 -0.6
145,090 - MIT1002_00135 0.19 -0.9
145,132 - MIT1002_00135 0.21 +1.8
145,203 + MIT1002_00135 0.23 +0.5
145,253 + MIT1002_00135 0.24 -0.7
145,270 - MIT1002_00135 0.25 +0.1
145,292 + MIT1002_00135 0.26 -0.7
145,298 + MIT1002_00135 0.26 -1.1
145,300 - MIT1002_00135 0.26 -1.3
145,370 - MIT1002_00135 0.28 +1.8
145,461 + MIT1002_00135 0.31 -2.3
145,461 + MIT1002_00135 0.31 +0.7
145,469 - MIT1002_00135 0.31 -0.9
145,469 - MIT1002_00135 0.31 +0.3

Or see this region's nucleotide sequence