Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00111

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00109 and MIT1002_00110 are separated by 3 nucleotidesMIT1002_00110 and MIT1002_00111 are separated by 194 nucleotidesMIT1002_00111 and MIT1002_00112 overlap by 8 nucleotidesMIT1002_00112 and MIT1002_00113 are separated by 9 nucleotides MIT1002_00109: MIT1002_00109 - Putative reactive intermediate deaminase TdcF, at 118,106 to 118,492 _00109 MIT1002_00110: MIT1002_00110 - tRNA (guanosine(18)-2'-O)-methyltransferase, at 118,496 to 119,203 _00110 MIT1002_00111: MIT1002_00111 - ATP-dependent DNA helicase RecG, at 119,398 to 121,470 _00111 MIT1002_00112: MIT1002_00112 - Ribosomal RNA small subunit methyltransferase J, at 121,463 to 122,239 _00112 MIT1002_00113: MIT1002_00113 - Putative peroxiredoxin, at 122,249 to 122,722 _00113 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 118.402 kb on + strand, within MIT1002_00109at 118.402 kb on + strand, within MIT1002_00109at 118.402 kb on + strand, within MIT1002_00109at 118.402 kb on + strand, within MIT1002_00109at 118.404 kb on - strand, within MIT1002_00109at 118.404 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.421 kb on + strand, within MIT1002_00109at 118.432 kb on - strand, within MIT1002_00109at 118.439 kb on - strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.604 kb on - strand, within MIT1002_00110at 118.644 kb on - strand, within MIT1002_00110at 118.680 kb on + strand, within MIT1002_00110at 118.682 kb on + strand, within MIT1002_00110at 118.685 kb on - strand, within MIT1002_00110at 118.690 kb on - strand, within MIT1002_00110at 118.692 kb on + strand, within MIT1002_00110at 118.760 kb on + strand, within MIT1002_00110at 118.780 kb on + strand, within MIT1002_00110at 118.822 kb on + strand, within MIT1002_00110at 118.822 kb on + strand, within MIT1002_00110at 118.825 kb on - strand, within MIT1002_00110at 118.876 kb on + strand, within MIT1002_00110at 118.900 kb on - strand, within MIT1002_00110at 118.918 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.010 kb on - strand, within MIT1002_00110at 119.010 kb on - strand, within MIT1002_00110at 119.010 kb on - strand, within MIT1002_00110at 119.032 kb on - strand, within MIT1002_00110at 119.035 kb on - strand, within MIT1002_00110at 119.039 kb on + strand, within MIT1002_00110at 119.042 kb on - strand, within MIT1002_00110at 119.078 kb on - strand, within MIT1002_00110at 119.086 kb on + strand, within MIT1002_00110at 119.093 kb on + strand, within MIT1002_00110at 119.093 kb on + strand, within MIT1002_00110at 119.093 kb on + strand, within MIT1002_00110at 119.101 kb on - strand, within MIT1002_00110at 119.204 kb on + strandat 119.212 kb on - strandat 119.251 kb on - strandat 119.253 kb on - strandat 119.257 kb on + strandat 119.284 kb on + strandat 119.292 kb on - strandat 119.326 kb on + strandat 119.426 kb on - strandat 119.444 kb on + strandat 119.444 kb on + strandat 119.695 kb on + strand, within MIT1002_00111at 119.867 kb on + strand, within MIT1002_00111at 119.966 kb on + strand, within MIT1002_00111at 119.986 kb on - strand, within MIT1002_00111at 120.034 kb on + strand, within MIT1002_00111at 120.036 kb on + strand, within MIT1002_00111at 120.049 kb on - strand, within MIT1002_00111at 120.080 kb on + strand, within MIT1002_00111at 120.086 kb on + strand, within MIT1002_00111at 120.130 kb on + strand, within MIT1002_00111at 120.217 kb on + strand, within MIT1002_00111at 120.217 kb on + strand, within MIT1002_00111at 120.225 kb on - strand, within MIT1002_00111at 120.243 kb on - strand, within MIT1002_00111at 120.278 kb on + strand, within MIT1002_00111at 120.319 kb on + strand, within MIT1002_00111at 120.407 kb on + strand, within MIT1002_00111at 120.416 kb on - strand, within MIT1002_00111at 120.458 kb on - strand, within MIT1002_00111at 120.567 kb on + strand, within MIT1002_00111at 120.814 kb on + strand, within MIT1002_00111at 120.822 kb on - strand, within MIT1002_00111at 120.822 kb on - strand, within MIT1002_00111at 120.990 kb on + strand, within MIT1002_00111at 120.998 kb on - strand, within MIT1002_00111at 121.063 kb on - strand, within MIT1002_00111at 121.144 kb on - strand, within MIT1002_00111at 121.210 kb on - strand, within MIT1002_00111at 121.506 kb on - strandat 121.517 kb on + strandat 121.577 kb on - strand, within MIT1002_00112at 121.577 kb on - strand, within MIT1002_00112at 121.601 kb on + strand, within MIT1002_00112at 121.613 kb on + strand, within MIT1002_00112at 121.613 kb on + strand, within MIT1002_00112at 121.661 kb on - strand, within MIT1002_00112at 121.749 kb on - strand, within MIT1002_00112at 121.781 kb on - strand, within MIT1002_00112at 121.791 kb on + strand, within MIT1002_00112at 121.792 kb on - strand, within MIT1002_00112at 121.792 kb on - strand, within MIT1002_00112at 121.792 kb on - strand, within MIT1002_00112at 121.895 kb on - strand, within MIT1002_00112at 121.900 kb on - strand, within MIT1002_00112at 121.952 kb on - strand, within MIT1002_00112at 122.095 kb on + strand, within MIT1002_00112at 122.105 kb on + strand, within MIT1002_00112at 122.127 kb on + strand, within MIT1002_00112at 122.149 kb on + strand, within MIT1002_00112at 122.151 kb on + strand, within MIT1002_00112at 122.151 kb on + strand, within MIT1002_00112at 122.151 kb on + strand, within MIT1002_00112at 122.151 kb on + strand, within MIT1002_00112at 122.151 kb on + strand, within MIT1002_00112at 122.151 kb on + strand, within MIT1002_00112at 122.158 kb on + strand, within MIT1002_00112at 122.159 kb on - strand, within MIT1002_00112at 122.159 kb on - strand, within MIT1002_00112at 122.159 kb on - strand, within MIT1002_00112at 122.179 kb on - strandat 122.356 kb on + strand, within MIT1002_00113at 122.364 kb on - strand, within MIT1002_00113at 122.374 kb on - strand, within MIT1002_00113at 122.388 kb on + strand, within MIT1002_00113at 122.412 kb on + strand, within MIT1002_00113at 122.447 kb on + strand, within MIT1002_00113

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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118,402 + MIT1002_00109 0.76 -0.7
118,402 + MIT1002_00109 0.76 -2.1
118,402 + MIT1002_00109 0.76 -3.3
118,402 + MIT1002_00109 0.76 -0.8
118,404 - MIT1002_00109 0.77 -0.2
118,404 - MIT1002_00109 0.77 +1.2
118,410 - MIT1002_00109 0.79 -2.9
118,410 - MIT1002_00109 0.79 -3.0
118,410 - MIT1002_00109 0.79 -4.2
118,410 - MIT1002_00109 0.79 -2.2
118,410 - MIT1002_00109 0.79 -2.1
118,410 - MIT1002_00109 0.79 -0.6
118,421 + MIT1002_00109 0.81 -0.7
118,432 - MIT1002_00109 0.84 -2.2
118,439 - MIT1002_00109 0.86 -2.5
118,441 + MIT1002_00109 0.87 -1.6
118,441 + MIT1002_00109 0.87 -0.4
118,441 + MIT1002_00109 0.87 -2.2
118,441 + MIT1002_00109 0.87 -3.1
118,441 + MIT1002_00109 0.87 -1.8
118,441 + MIT1002_00109 0.87 -0.8
118,441 + MIT1002_00109 0.87 +0.0
118,449 - MIT1002_00109 0.89 -3.3
118,449 - MIT1002_00109 0.89 -2.1
118,449 - MIT1002_00109 0.89 -0.8
118,449 - MIT1002_00109 0.89 -1.7
118,449 - MIT1002_00109 0.89 -3.0
118,604 - MIT1002_00110 0.15 -0.7
118,644 - MIT1002_00110 0.21 -2.8
118,680 + MIT1002_00110 0.26 +0.4
118,682 + MIT1002_00110 0.26 -2.2
118,685 - MIT1002_00110 0.27 -0.8
118,690 - MIT1002_00110 0.27 -0.2
118,692 + MIT1002_00110 0.28 +0.0
118,760 + MIT1002_00110 0.37 -0.0
118,780 + MIT1002_00110 0.40 +3.3
118,822 + MIT1002_00110 0.46 +1.6
118,822 + MIT1002_00110 0.46 +0.2
118,825 - MIT1002_00110 0.46 +0.2
118,876 + MIT1002_00110 0.54 -2.7
118,900 - MIT1002_00110 0.57 -0.8
118,918 + MIT1002_00110 0.60 +0.9
119,002 + MIT1002_00110 0.71 +2.5
119,002 + MIT1002_00110 0.71 -0.5
119,002 + MIT1002_00110 0.71 +0.1
119,002 + MIT1002_00110 0.71 -1.7
119,002 + MIT1002_00110 0.71 -0.4
119,002 + MIT1002_00110 0.71 -0.2
119,010 - MIT1002_00110 0.73 +1.4
119,010 - MIT1002_00110 0.73 -0.5
119,010 - MIT1002_00110 0.73 +1.3
119,032 - MIT1002_00110 0.76 -0.6
119,035 - MIT1002_00110 0.76 -0.1
119,039 + MIT1002_00110 0.77 -0.8
119,042 - MIT1002_00110 0.77 +1.0
119,078 - MIT1002_00110 0.82 +1.0
119,086 + MIT1002_00110 0.83 -0.8
119,093 + MIT1002_00110 0.84 -0.6
119,093 + MIT1002_00110 0.84 +0.0
119,093 + MIT1002_00110 0.84 -0.0
119,101 - MIT1002_00110 0.85 +0.1
119,204 + -0.3
119,212 - -0.0
119,251 - +0.6
119,253 - +0.2
119,257 + +1.1
119,284 + -0.1
119,292 - -2.5
119,326 + -0.4
119,426 - -1.1
119,444 + -0.1
119,444 + -0.2
119,695 + MIT1002_00111 0.14 -0.1
119,867 + MIT1002_00111 0.23 -1.3
119,966 + MIT1002_00111 0.27 -0.8
119,986 - MIT1002_00111 0.28 -1.0
120,034 + MIT1002_00111 0.31 -0.6
120,036 + MIT1002_00111 0.31 +0.1
120,049 - MIT1002_00111 0.31 +0.4
120,080 + MIT1002_00111 0.33 -0.2
120,086 + MIT1002_00111 0.33 -1.9
120,130 + MIT1002_00111 0.35 -0.9
120,217 + MIT1002_00111 0.40 -0.3
120,217 + MIT1002_00111 0.40 +0.1
120,225 - MIT1002_00111 0.40 +0.4
120,243 - MIT1002_00111 0.41 +0.9
120,278 + MIT1002_00111 0.42 +1.3
120,319 + MIT1002_00111 0.44 +0.7
120,407 + MIT1002_00111 0.49 +0.4
120,416 - MIT1002_00111 0.49 -0.8
120,458 - MIT1002_00111 0.51 -1.2
120,567 + MIT1002_00111 0.56 +1.3
120,814 + MIT1002_00111 0.68 -0.1
120,822 - MIT1002_00111 0.69 -0.8
120,822 - MIT1002_00111 0.69 -0.7
120,990 + MIT1002_00111 0.77 +0.7
120,998 - MIT1002_00111 0.77 +0.9
121,063 - MIT1002_00111 0.80 +1.3
121,144 - MIT1002_00111 0.84 +0.7
121,210 - MIT1002_00111 0.87 +0.4
121,506 - -0.2
121,517 + +0.3
121,577 - MIT1002_00112 0.15 -2.2
121,577 - MIT1002_00112 0.15 -2.0
121,601 + MIT1002_00112 0.18 -0.0
121,613 + MIT1002_00112 0.19 -0.7
121,613 + MIT1002_00112 0.19 -0.8
121,661 - MIT1002_00112 0.25 -1.5
121,749 - MIT1002_00112 0.37 -0.3
121,781 - MIT1002_00112 0.41 -0.3
121,791 + MIT1002_00112 0.42 -0.6
121,792 - MIT1002_00112 0.42 +1.3
121,792 - MIT1002_00112 0.42 +1.3
121,792 - MIT1002_00112 0.42 +2.4
121,895 - MIT1002_00112 0.56 -0.4
121,900 - MIT1002_00112 0.56 -1.2
121,952 - MIT1002_00112 0.63 -1.2
122,095 + MIT1002_00112 0.81 -2.1
122,105 + MIT1002_00112 0.83 -0.4
122,127 + MIT1002_00112 0.85 -0.7
122,149 + MIT1002_00112 0.88 -2.3
122,151 + MIT1002_00112 0.89 +1.3
122,151 + MIT1002_00112 0.89 -1.0
122,151 + MIT1002_00112 0.89 -0.3
122,151 + MIT1002_00112 0.89 +0.4
122,151 + MIT1002_00112 0.89 +0.5
122,151 + MIT1002_00112 0.89 +0.4
122,158 + MIT1002_00112 0.89 -1.7
122,159 - MIT1002_00112 0.90 +0.4
122,159 - MIT1002_00112 0.90 +1.3
122,159 - MIT1002_00112 0.90 -2.9
122,179 - -0.4
122,356 + MIT1002_00113 0.23 -0.8
122,364 - MIT1002_00113 0.24 -2.1
122,374 - MIT1002_00113 0.26 -3.4
122,388 + MIT1002_00113 0.29 -1.7
122,412 + MIT1002_00113 0.34 -2.9
122,447 + MIT1002_00113 0.42 -3.6

Or see this region's nucleotide sequence